Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3302 ATGGATTTCGACGAGTACGAATACTTGGAGAAGACAGTGGAAGAGCTGGAAGACAAAGACTCGAAGAAGAATGAAAGCAGCGACAAAACCGAACGGAGCTACAGAAAGCGCGATGAGATTGAAGATGGCACCGAAGAGAAGAGGAGCAAAAGAAGGTCCAGCGGCGACGGCGATGACGAGCGTGTCTCGAAGAAGGATAGAGATCGTGATGATGACCGTGACAAGGAGCGTCATCGGAGTGGCAGAGATAGAGATAGGGATAGGGACAGAGATGGCGAGAGAAGCAGCAGAGATAGGGATAGGGATAGGGAGAAGGATAGGGACAGAGAGAAAGATAGGAGAGAGAAGGAGAAAGAGAGGGAAAGGAGAGAGAGGGAAAGGGAGAAGGAAAGGGAGAGAGAAAGGTCTCGGAGGAGTAAGAGTCGTTCTGAGAGAGACAGGGAGATTGAAAGAGAGGAGAGAGAGAGGTCTCGGAGAAGCATAAGCCGTTCTGAACGAGACAGGGAGAGAGAACGGGAGGAGAGAGATAGGTCTCGGAGGAGTAGAAGTCGTTCTGAGCGCGATTTTGAAATGAGAGATAGCCGGAGATTTAGGGAGAAGAAAGAAACTGTCGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCCCTCTCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTAAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTACCGGAGCTGCTGGTGTGGTAGGACCATATGGAGCCGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTAGAGGTTGTGCAACTGCCCCTTGACCTGGAGACCGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATATAGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATATTGGAAGTCAAGACACAACAACAAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTACTGCAAGCATTGGTTTACCCATGAATGGGTTGGCTCCTGCTCAGCCGGCTATTAGTTTGCCTATTGGTAATACTGGATTAATACATCCTGGATTAATACCTGCACCTGGACTAGCTCTACCAACTCAAATTATGCCTACCCAAGTGGCCGAACCTGTCGGAACCCCCAGCAACTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACCGAACCAGATTTTGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTTGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTCGCACGCAAAATGATTTCAGCTATATACATGCAACCTCATGAGTATGAAGCCAAGTTTAAAGGGGAACTTTGA 1764 0.4586 MDFDEYEYLEKTVEELEDKDSKKNESSDKTERSYRKRDEIEDGTEEKRSKRRSSGDGDDERVSKKDRDRDDDRDKERHRSGRDRDRDRDRDGERSSRDRDRDREKDRDREKDRREKEKERERREREREKERERERSRRSKSRSERDREIEREERERSRRSISRSERDREREREERDRSRRSRSRSERDFEMRDSRRFREKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVSSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGITASIGLPMNGLAPAQPAISLPIGNTGLIHPGLIPAPGLALPTQIMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPHEYEAKFKGEL* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3302 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Mtr3g3302 587 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 585 - -
Mtr3g3302 587 TIGRFAM SF-CC1: splicing factor, CC1-like family 97 581 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mtr3g3302 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 395 IPR000504 GO:0003723
Mtr3g3302 587 Coils Coil 107 135 - -
Mtr3g3302 587 Coils Coil 154 181 - -
Mtr3g3302 587 SUPERFAMILY RNA-binding domain, RBD 317 579 IPR035979 GO:0003676
Mtr3g3302 587 Gene3D - 488 586 IPR012677 -
Mtr3g3302 587 SMART rrm1_1 318 391 IPR000504 GO:0003723
Mtr3g3302 587 SMART rrm1_1 494 571 IPR000504 GO:0003723
Mtr3g3302 587 SMART rrm1_1 216 288 IPR000504 GO:0003723
Mtr3g3302 587 PANTHER CC1-LIKE SPLICING FACTOR 1 585 - -
Mtr3g3302 587 MobiDBLite consensus disorder prediction 12 214 - -
Mtr3g3302 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 284 IPR000504 GO:0003723
Mtr3g3302 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 567 IPR000504 GO:0003723
Mtr3g3302 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 389 IPR000504 GO:0003723
Mtr3g3302 587 Gene3D - 143 301 IPR012677 -
Mtr3g3302 587 CDD RRM1_RBM39_like 216 288 - -
Mtr3g3302 587 SUPERFAMILY RNA-binding domain, RBD 208 295 IPR035979 GO:0003676
Mtr3g3302 587 MobiDBLite consensus disorder prediction 1 214 - -
Mtr3g3302 587 CDD RRM3_RBM39_like 492 574 - -
Mtr3g3302 587 Gene3D - 313 408 IPR012677 -
Mtr3g3302 587 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 410 511 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3302 Mtr-Chr3 46975227 46983133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3302 316 390 Eukaryotic Initiation Factors Gene Family AT4G34110 39.474 5.88e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3302 K13091 - gmx:100802446 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3234 8 42850503 42856635 Mtr3g3302 3 46975227 46983133 ECH
Mtr3g3302 3 46975227 46983133 Mtr3g3302 3 46975227 46983133 ECH
Mtr8g3234 8 42850503 42856635 Mtr3g3302 3 46975227 46983133 PCT