Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3300 ATGTGTATGGTAAAGGTGGCGAATTCAAAAGACAAAGTGGTTATCAAAAGTGAATTCAATGATCATACTAAATTGTCAACTGAAATGATCTTTCCAGGTTTGAATAGGGATAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATCGTTTCTGGAGATGTTCCAACCCAAAGTGACGCTGATATAGTTCATCATAATAGTGCAATTGAAGGAAGGGTTGCTTTTGCAACAAATATCAATAACAATATGTCTTCTCCTTCTACAACACAATCTTTGTCTTCTCCTTCTTCTTCATGTTCTTCTCTCAAGAGAACTAGGGAAGATGATAGATTTGTTGGTGATTTCAAATTCCTCGGTGGTTCCTCCCCTGCTTTGCCAACAACAATTGCAGAAAGTTCAAGCATTAATAGGACAACAACAAGAATAACAAGAGAAATGGGGAATGCAGTATACGAATATAAAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGCAAAGAGAAAATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCCAAACTCAATTTCCCTGAAAATGTTACACTTCGTAACCCTCCACCAGCTACTACTACTACTCAATGGAACGTTTCGAATTCACCGAGTTCGATTGTTTCTATTACAACTTCTACTGATCCTGTTGTTCATACTAGACCTTTTCCTAACTCTTCTCAGCATTCGACAAACTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTCCTGCAAGGAATGTTTATGATGATAATGTGATTAGGGCTTCTTCTATGGCTTCTCATCTACAATCTTCATCATCGTCGCCAGCTTCTTCTTTGTCATCATCTTCTTCTGCATTTGTTTCTTCTATGCAGGGCAATACTTCAGTTTCCTCGTATTTTTCTACTCAGTTGCCACCTTGGTCTACTTCGGATCAGAGCTCTTCTCCTTCTTGA 1074 0.3901 MCMVKVANSKDKVVIKSEFNDHTKLSTEMIFPGLNRDREMSAMISALTHIVSGDVPTQSDADIVHHNSAIEGRVAFATNINNNMSSPSTTQSLSSPSSSCSSLKRTREDDRFVGDFKFLGGSSPALPTTIAESSSINRTTTRITREMGNAVYEYKRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRNPPPATTTTQWNVSNSPSSIVSITTSTDPVVHTRPFPNSSQHSTNFYDRFQFSGIPPARNVYDDNVIRASSMASHLQSSSSSPASSLSSSSSAFVSSMQGNTSVSSYFSTQLPPWSTSDQSSSPS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3300 357 Gene3D AP2/ERF domain 168 228 IPR036955 GO:0003700|GO:0006355
Mtr3g3300 357 MobiDBLite consensus disorder prediction 82 104 - -
Mtr3g3300 357 SMART rav1_2 169 232 IPR001471 GO:0003700|GO:0006355
Mtr3g3300 357 MobiDBLite consensus disorder prediction 82 102 - -
Mtr3g3300 357 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Mtr3g3300 357 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700|GO:0006355
Mtr3g3300 357 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677
Mtr3g3300 357 MobiDBLite consensus disorder prediction 231 247 - -
Mtr3g3300 357 Pfam AP2 domain 169 218 IPR001471 GO:0003700|GO:0006355
Mtr3g3300 357 PANTHER DNA-BINDING DOMAIN 35 354 IPR044808 GO:0003700|GO:0009873
Mtr3g3300 357 CDD AP2 169 228 IPR001471 GO:0003700|GO:0006355
Mtr3g3300 357 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700|GO:0006355
Mtr3g3300 357 MobiDBLite consensus disorder prediction 336 357 - -
Mtr3g3300 357 MobiDBLite consensus disorder prediction 227 247 - -
Mtr3g3300 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 35 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3300 Mtr-Chr3 46951393 46953609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3300 167 231 AP2-EREBP Transcription Factor Family AT5G61890 84.615 3.70e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g3300 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3300 - - mtr:MTR_3g095190 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3300 3 46951393 46953609 Mtr3g3300 3 46951393 46953609 ECH
Mtr8g3231 8 42814332 42816206 Mtr3g3300 3 46951393 46953609 ECH