Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3292 ATGGAATTAGCCTCAAAGCTCCACCACCTCGACCTCACCGGAGCATTCATTCTCGATTCTCGACGCCTTCCACGCACCCTATCCCACACTCATCTCATCGCCAAACCCAACACCTTTAACACTAAAACTAACCCCAATCGATTCTTCAGCTCAAAAAAACTCAATCATACTTCACGTTTATCCGCCGTCGCCGCGGTGGATGAAACTTCAGTAGAAGAAGATGATATTGAGTCACTTTTTACCGATACTTCAGCCGATGAACGACGCGGTAACAATAAACAATCTAACACCGGTGCTTCAAGCGTTTCGTCTGGTGTGAAGTTAGAAAATATTAGAAAAACTTACAAAGGTGTTACGGTTTTGAAAGAGGTTAATTGGGAAGTGAAAAAGGGTGAGAAAGTGGGTTTAGTTGGTGTAAATGGTGCGGGGAAGACAACACAGATGAGGATTATTGCGGGTTTGGAGGAACCGGATTCAGGGAATGTGATTAAAGCGAAACCGAATATGAAAATCGCGTTTTTGAGTCAGGAATTTGAGGTTTCGCAGAGTAGGACGGTGAGGGAGGAGTTTATGAGTGCTTTTAAAGAGGAAATGGAGGTTGCGGGGAAATTGGAGAAAGTGCAGAAGGCGCTTGAGGGTTCTGTTAACGATTTGGAGTTGATGGGGAGGCTTTTGGACGAGTTTGATTTGCTTCAGAGACGAGCTCAGGCTGTGAATTTGGATATCGTTGATTCGAAGATAAGTAAGTTGATGCCTGAGCTTGGTTTTGGTGTAGAGGATTCTGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGCCTTGGCAAGATTCTTCTTCAGGAACCGGATTTACTGTTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACAATTGAGTGGCTTGAAGATTATCTTAACAGGCAGGATGTGCCGATGGTTATCATTTCTCACGACAGAGCTTTTCTTGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATTCTTTCAAAGGCGACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAAACAAGAGAGTTGATAAGCAGGTTAGGTGCTGGAGCAAGTTCTGGCCGTGCTTCGACTGCTGAGAAGAAATTGGAAAGACTTCTTGGAGAGGAACTAGTAGAGAAGCCTTTTGAGCGGAAGCAAATGAAAATCAGGTTCCCTGTGCGTGGAAGCAGTGGAAGATCTGTTGTAACTGTTAGGAACTTGGATTTTGGCTTTGAGGATAAAAAACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTCTAGAGAAGCCAATCAGCGGTGAAGTTATCCTTGGGGAGCATAATATATTGCCTAACTATTTCGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAGACGGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGAGTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTACTTGTTTTGGATGAACCAACAAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAACCGAGTACGAGGGCACTGTTATCACCGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCACTGTACAGGATTATGCTGGAGATTACAATTATTATTTGGAGAAGAATCTTGATGCCAGGGAAAAAGAGCTTGAACGTCAGGCAGAGCTTGACGACAAAGCTCCTAAATTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAGCAAGCAAAACAGAAGTCTAAAGGTGCAAAGAATTCAAAGAGATGGAATTAA 2103 0.4232 MELASKLHHLDLTGAFILDSRRLPRTLSHTHLIAKPNTFNTKTNPNRFFSSKKLNHTSRLSAVAAVDETSVEEDDIESLFTDTSADERRGNNKQSNTGASSVSSGVKLENIRKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVAGKLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDIVDSKISKLMPELGFGVEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNRQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAEKKLERLLGEELVEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKKLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNILPNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYEGTVITVSHDRYFIKQIVNRVIEVKDGTVQDYAGDYNYYLEKNLDAREKELERQAELDDKAPKLKAKSKMSKAEKEARKKQKMQAFQQAKQKSKGAKNSKRWN* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3292 700 ProSitePatterns ABC transporters family signature. 552 566 IPR017871 GO:0005524
Mtr3g3292 700 Gene3D - 397 663 IPR027417 -
Mtr3g3292 700 Pfam ABC transporter 449 580 IPR003439 GO:0005524
Mtr3g3292 700 Pfam ABC transporter 121 296 IPR003439 GO:0005524
Mtr3g3292 700 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 48 690 - -
Mtr3g3292 700 Gene3D - 103 387 IPR027417 -
Mtr3g3292 700 Pfam ABC transporter 335 422 IPR032781 -
Mtr3g3292 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 341 IPR027417 -
Mtr3g3292 700 SMART AAA_5 457 625 IPR003593 -
Mtr3g3292 700 SMART AAA_5 130 345 IPR003593 -
Mtr3g3292 700 CDD ABCF_EF-3 433 625 - -
Mtr3g3292 700 MobiDBLite consensus disorder prediction 648 700 - -
Mtr3g3292 700 ProSitePatterns ABC transporters family signature. 268 282 IPR017871 GO:0005524
Mtr3g3292 700 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 433 648 IPR003439 GO:0005524
Mtr3g3292 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 638 IPR027417 -
Mtr3g3292 700 Coils Coil 660 689 - -
Mtr3g3292 700 CDD ABCF_EF-3 106 336 - -
Mtr3g3292 700 MobiDBLite consensus disorder prediction 80 103 - -
Mtr3g3292 700 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 364 IPR003439 GO:0005524
Mtr3g3292 700 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 48 690 - -
Mtr3g3292 700 MobiDBLite consensus disorder prediction 648 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3292 Mtr-Chr3 46832784 46838386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3292 430 650 Calmodulin-binding Proteins AT2G36910 25.911 1.94e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3292 - - gmx:100796907 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3292 3 46832784 46838386 Mtr3g3292 3 46832784 46838386 ECH