Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3287 ATGGCACCAAAAACCAGAACCGCAAGAGTGAGCCGTAACCCTGAATTGATAAGGGGTATCGGGAAATACTCGAGATCTGCTATGTACCACAAACGTGGTCTATGGGCTATCAAGGCTAAGCACGGCGGAGCTTTCCCTCGTCACGATCCCGTCGCTAAGCCTGCAGCTCCGGTCGAGAAGCCACCTAAGTTTTACCCTGCCGACGACGTGAAGAAGCCACTCCGCAACAAGCACAAGCCAAAGCCCACTAAGCTCAGGGCTTCCATTACTCCTGGAACAGTGTTGATTCTTCTTGCAGGAAGATTTAAGGGGAAGAGAGTTGTGTTTCTCAAACAGCTTCCTTCTGGACTTCTTCTTGTTACTGGCCCATTCAAGATTAACGGAGTCCCCTTGAGACGTGTGAATCAAGCTTATGTTATCGGCACATCTACCAAAGTAGATATTTCTTCAGTTAATGCTGACAAGTTTGATGACAAGTACTTCTCAAAGGAATCCCAGAAAAAGACTAAGAAGGGAGAGGGCGAGTTCTTTGAGGCAGATAAGGAGGACAAAAAGGTGCTCCCTCAGGAGAAGAAAGATGATCAAAAGACTGTTGATGCTGGTTTGTTAAAAGCCATTGACAGTGTTCCAGATTTGAAAACTTACCTAGGTGCCAGGTTTTCCTTGAAGGCAGGTGTGAAGCCACATGAGTTGGTCTTCTAG 702 0.4687 MAPKTRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNADKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3287 233 MobiDBLite consensus disorder prediction 52 85 - -
Mtr3g3287 233 CDD KOW_RPL6 81 233 IPR041997 -
Mtr3g3287 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Mtr3g3287 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Mtr3g3287 233 SUPERFAMILY Translation proteins SH3-like domain 87 176 IPR008991 -
Mtr3g3287 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Mtr3g3287 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Mtr3g3287 233 Gene3D - 87 171 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3287 Mtr-Chr3 46758399 46760785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3287 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.258 6.23e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3287 K02934 - nnu:104591219 397.512