Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3281 ATGGCTGAAGATAGTCCACGACTTGGAGGGTTTTCAGCTGGTCTGGCTGTTATATTGAACGGCAACGACAATAAGAAAAAGTTGCCGAATACTAGACTACTTTCTTGTTGTGATGATTTAGGTGAACAGTCTGTGGAAAGAACACTTGAATATGTGTTTGGTCTCCCCAACAGATCGTTGAATTCGTTGGATGGTCCGGTTGACAGTAGTTTTATTCGTTCTGTCATTAAGAATGTTTTTCCACGATATATTGCAAAATCGGGTGATTCTTTTAGTGAAAGAGATATGATATGTGGACCAGATGTTGTAGGCCTTGATGAGTCCAGCATATGTGGTGATATTAAAGTCATCAAGTCACCTTTACTTGTTGAGAGCTTGGAAATGTTCAGTAGTGTCAGGGCGAATACATGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCGGGTATACAGCAGATTGGTTGGGCCACTGTTTCTTGCCCTTTCACGGACCATAAAGGTGTTGGTGATGCCGATGATTCATATGCCTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACGTATGGTCAGTCATGGGTGGTTGGTGATGTCATTGGATGTTGCATAGATTTGGACCGGGATGAAATATTATTCCACAGGAATGGCAATTCACTTGGGGTGGCATTCGAAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATCATCCAGCAATCTCTCTCTCGCAGGGTGAAAGATGTGAATTGAACTTTGGTGCCCGACCCTTCAAGTACGCAATTGAAGGCTACCGTCCTCTTCAGGCTCCTCCCTCTAAGAGCTACTTTGTCACGCGATTGCTACTGTGCTGGTCAAGGCTGTTGGACATGCATTCTGTGGAGCGAACTGAACATTCTTTAGCACAGAAATTGAGAAGAGCAAAGAGGTTTGTTTCATTGGAAGAAATTTTCCGTCCTGTCTCATATGCTATTTGTGAAGAATTATTCTGTATACTTGAAGAAGATGTTGGACAAGCAGAGTATATGGTTTGGGGTCCATTGATGTCCTTCATGTTTGAAGTTTTTGAATTGCATGCACCCCATGACTATTCAAGCATGGATAAAGTAGTTGAAGTATTGTTACAATTTCAAGGATCACACATGCTGTTTGAAAACATCATAAATGCACTTTCATGCGGTTGCAAAATGGCACAGTTAGTTTTGACTGAATGTCCGTACTCTGGATCATATTCTTACCTAGCACTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAATCACCAGATTTTGAATTTTTGTTTGAAGGTTTTATGTCACAAAAAACTCCAAACAAGCAGGATCTTGACTCCATGATACCTACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATGTTGTGAAGGTAACATGATGTTGACAACCACAGCTTTGTCGGAGTCAATCAGCAAGATTGAGGAGAAGCATCGGGACCTCTGTCGCTTAGTTATACAGTTTATACCGCCTACAACACCTCCACAATTACCTGGAGCAGTATTTAGGACATTTTTACAAAACCTTCTACTGAAGAACAGAGGGGCAGAAAGAAATGTCCCACCGCCTGGAGTTTCTAGCAATTCAGTTCTTGTTTCAATTTATACAGTTGTGCTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTACAAAGCAGATGTTGGTTTCCTTCATAGAGGTGGTCAACAAAGTTTTCCCATACACTTGTTTTTGAAAAATGATCCTCATAGAACAGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCTACAATTGATCATGAAAGGGAAGTAGTTCAATGGGATGAAGGTTGCATGGATAATGAAGAAACCAGAGTGACACATTCAACCAGGCAGAAGCCGTGCTGCTGTTCTAGTTATGATTCTGAATTTTCAAGGAATTTGAAGGTTCCTGCTAAGTACCTGGCGAAAGGGTCTCGGGGCCATTGCAGCTCTATTCCAGAAAGACCTGCTCATGTTGCTGCTGAATGCAGCAGTGATGGGAGTTTGAATGATGAGATAACAGATAAACCCAGTTCTAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATCTGAAATCTGTACCCAAGGATACTGATGTTTATATGGATACGCTGCAAGAAGAAGAGCTGCTTGATGCACTGTTATGGCTGTATCAAGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCGTACTACATGACTCATCAGGCACAATCAATCTCGCTATTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGTGGTGAAAAGTTGAAGCATTTGAAAGAAGCTCGTAATGAGTATAGAGAAGAGGTCATTGATTGTGTTAGGCACTGCGCTTGGTATCGTATCTCTTTGTTATCACGATGGAAGCAGCGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGCTGCTACTGGTTCTTAGCAATATGGATTCAGTGTTTATCTACACCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAGAGTGATCCTCCATTTGTTCCGTCCACAATTTTGATCAAGCGTGGACTTGTTTCATTTGTCACTTTTGTTGTTACTCATTTCAATGATCCAAGGATATCAAGTGCGGATCTTAGAGATCTTCTTCTCCAGTCTATATCCGTCCTGGCGCAGTACAAAGAGTATTTGGCAGTTTTTGAGAGTAACGAGGCAGCCAACCAAAGGCTGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGCATCCCGGTGACGAACATACTCCTGCGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAACGGGGAATCATCTTCATCATCAATTCTTTTCCAAAGGTTGCTAAAAGAAGCTTGCATAAATGATGAAGGATTATTTTCATCTTTTCTAAACCGTCTATTTAATACACTTAGCTGGGCCATGACAGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAGAAGTACCAGGTAATGGAGTTTCAGCAAAAGAAATGTGGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTTTGGAGTTCTGCACTCATGAGATTCCTCAAGCATTTCTGTCTGGACCAGAAACAAACCTCAGGAGGTTAACTGAGTTGGTTGTATTTATCTTGAATCACATGACTTCTTCAGCCGATGCTGAATTCTTTGAATTGTCCCTTAGACGTCATAGCCAATCTTCAGAGAAAGTAAATCGAGGCATGATATTGGCGCCTCTCGTAGGGATCATGTTAAATATATTGGATGCTACCAAGTTGGCAGAGTATCGAGAGAACAATGATCTCGTCGATGTTTTGCTAAGCATGGACTGTCCAGATACTGTTCTTTATGGTTTCCAATTTCTTGTGGATTATAACTGGGATGGATCGTGTCGAGGGGGAGCTTACGCGGCAAAATATAAGCAGTTAGAAAATTTCTTGACACTTCTTGCTTGCCGCCTTATGTCTGAACGTGATGAAGTGGACAGTGTTGTAGATACAGACCTTGATGACAACTTATGCTGCATATGTTACGCTTGTGAAGCAGATGCCCAGATTGCACCTTGTTCACATAGGTCTTGCTATGGCTGTGTAACTAGGCATCTTTTGAACTGTCAAAGATGTTTCTTTTGCAATGCCACAGTGACAGATGTTAGCAGAATTAATGAGAAGACAGGCTAA 3804 0.4154 MAEDSPRLGGFSAGLAVILNGNDNKKKLPNTRLLSCCDDLGEQSVERTLEYVFGLPNRSLNSLDGPVDSSFIRSVIKNVFPRYIAKSGDSFSERDMICGPDVVGLDESSICGDIKVIKSPLLVESLEMFSSVRANTCVWKGKWMYEVMLETSGIQQIGWATVSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDVIGCCIDLDRDEILFHRNGNSLGVAFEGIRKMGPGFGYHPAISLSQGERCELNFGARPFKYAIEGYRPLQAPPSKSYFVTRLLLCWSRLLDMHSVERTEHSLAQKLRRAKRFVSLEEIFRPVSYAICEELFCILEEDVGQAEYMVWGPLMSFMFEVFELHAPHDYSSMDKVVEVLLQFQGSHMLFENIINALSCGCKMAQLVLTECPYSGSYSYLALACHLLRREELMVLWWKSPDFEFLFEGFMSQKTPNKQDLDSMIPTVWWPGSCEDACCEGNMMLTTTALSESISKIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQNLLLKNRGAERNVPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSYKADVGFLHRGGQQSFPIHLFLKNDPHRTDISRLGGSYTHLSKLHSTIDHEREVVQWDEGCMDNEETRVTHSTRQKPCCCSSYDSEFSRNLKVPAKYLAKGSRGHCSSIPERPAHVAAECSSDGSLNDEITDKPSSSDQSEPEYGYRQVHHLKSVPKDTDVYMDTLQEEELLDALLWLYQVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACGEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYTPEYYLEALVDCFHVLRKSDPPFVPSTILIKRGLVSFVTFVVTHFNDPRISSADLRDLLLQSISVLAQYKEYLAVFESNEAANQRLPKALLSAFDNRSCIPVTNILLRLCKGSGFSFSKNGESSSSSILFQRLLKEACINDEGLFSSFLNRLFNTLSWAMTEFSVSVREMQEKYQVMEFQQKKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELVVFILNHMTSSADAEFFELSLRRHSQSSEKVNRGMILAPLVGIMLNILDATKLAEYRENNDLVDVLLSMDCPDTVLYGFQFLVDYNWDGSCRGGAYAAKYKQLENFLTLLACRLMSERDEVDSVVDTDLDDNLCCICYACEADAQIAPCSHRSCYGCVTRHLLNCQRCFFCNATVTDVSRINEKTG* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3281 1267 SUPERFAMILY RING/U-box 1195 1257 - -
Mtr3g3281 1267 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
Mtr3g3281 1267 ProSiteProfiles B30.2/SPRY domain profile. 83 263 IPR001870 -
Mtr3g3281 1267 CDD RING-HC_RNF123 1213 1253 - -
Mtr3g3281 1267 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1266 IPR045129 GO:0004842
Mtr3g3281 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1208 1264 IPR013083 -
Mtr3g3281 1267 SUPERFAMILY Concanavalin A-like lectins/glucanases 99 265 IPR013320 -
Mtr3g3281 1267 MobiDBLite consensus disorder prediction 698 725 - -
Mtr3g3281 1267 CDD SPRY_RNF123 131 259 IPR035773 -
Mtr3g3281 1267 Gene3D - 103 286 IPR043136 -
Mtr3g3281 1267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1266 - -
Mtr3g3281 1267 Pfam Ubiquitin elongating factor core 720 952 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Mtr3g3281 1267 MobiDBLite consensus disorder prediction 702 721 - -
Mtr3g3281 1267 SMART SPRY_3 140 262 IPR003877 GO:0005515
Mtr3g3281 1267 Pfam SPRY domain 142 260 IPR003877 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3281 1194 1259 C3H Transcription Factor Family AT1G62370 36.364 8.89e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3281 K12169 - gmx:100800617 2271.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3281 3 46712088 46722424 Mtr3g3281 3 46712088 46722424 ECH