Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3277 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATAAAAAGAGAAGGAGATCATGATGTTTCAAATTCATCAAATCAGATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACCCCTTGTGCAGCATGTAAGCTATTAAGAAGAAGATGTGCTCAAGAGTGTCCCTTTTCTCCCTATTTCTCTCCTCATGAACCCCAAAAGTTTGCTTCTGTTCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAAATGCTTATGGTAGCAGAATGTTCAAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCATTGCAACAACAGGTTCAATCTTTACAAGCAGAACTCAATCTATTAAGAGGTGAAATACTTAAATATAAATTAAGGGAAGCAGCTAACATCAACATGAATATGAATATGAATATGAATAATATGATACCTTCTTCTCATCAACTTGCAATGCTCCCTTCTAATTCCTCTGTGGCTGTTTCTATTGCTGCTCCACCGCCGCCGCCGCCGCCTCTTCCTCCACCTCCTATTTCTTCTACAACTTCTAATTCCTCTTCTTCCATATACTTTCAACAGAGGGATCCCAACTATAATACAATTTCAAGTGATGATAATATTTCCTATTTTGGTTAA 711 0.3868 MSRERERFDEIGKKIKREGDHDVSNSSNQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNLLRGEILKYKLREAANINMNMNMNMNNMIPSSHQLAMLPSNSSVAVSIAAPPPPPPPLPPPPISSTTSNSSSSIYFQQRDPNYNTISSDDNISYFG* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3277 236 MobiDBLite consensus disorder prediction 205 236 - -
Mtr3g3277 236 MobiDBLite consensus disorder prediction 186 236 - -
Mtr3g3277 236 Pfam Lateral organ boundaries (LOB) domain 47 142 IPR004883 -
Mtr3g3277 236 Coils Coil 125 152 - -
Mtr3g3277 236 ProSiteProfiles LOB domain profile. 46 146 IPR004883 -
Mtr3g3277 236 MobiDBLite consensus disorder prediction 1 38 - -
Mtr3g3277 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 236 - -
Mtr3g3277 236 MobiDBLite consensus disorder prediction 188 204 - -
Mtr3g3277 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 31 236 - -
Mtr3g3277 236 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3277 Mtr-Chr3 46662369 46663806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3277 5 157 AS2 family AT2G30340 67.925 1.23e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr3g3277 LOB 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3277 - - gmx:100790799 293.123