Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3252 ATGGCTCTCCGTCAACGCCTCCACCGCCTTTTGCTTGACGCAGATTCAACTTCAACAACTGCATCAGGTTACATGAATAGGTCAAGGGAGCCTTTCACAACCCCGGGTGATTCAAATTTTGACACCAACATGGTGTTTATCTTGGCAGCTTTACTTTGTGCACTTATTTTTGCATTAGGACTCAACTCAATTGTAAGGTGTGTTCTAAGATGTAGCAACAGGTATGCTTTTGAGACACCAGATGAAGCTATGGCTCGTTTAGCATCAAAGGGTTTAAAGAAAAGTGCATTGCGTAAGATCCCTGTAGCTGTTTATGGTTCTGGAGGTAGTAGTACTAGTTTTGCAGCCACAGAATGTCCAATTTGTCTTGGGGAGTTTATGGATGGAGAGAAAGTTAGAATTCTGCCAAAATGTAACCATGGATTCCATGTAAAATGCATAGATACTTGGTTGCTTTCACACTCCTCCTGTCCTACTTGTAGACAGACTTTGATTGAATATCCAACTAGTTGTGGAGCTGCATCTGCTGTGAATGTTGCTGTGGCTGCAAGGACCACAAATCATGTAGATAATGGCTTAGGAGGGCATGAACATATGAACCTTTTAGCTATGGAAGAAGTTGGCTGTTTGTGA 633 0.4234 MALRQRLHRLLLDADSTSTTASGYMNRSREPFTTPGDSNFDTNMVFILAALLCALIFALGLNSIVRCVLRCSNRYAFETPDEAMARLASKGLKKSALRKIPVAVYGSGGSSTSFAATECPICLGEFMDGEKVRILPKCNHGFHVKCIDTWLLSHSSCPTCRQTLIEYPTSCGAASAVNVAVAARTTNHVDNGLGGHEHMNLLAMEEVGCL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3252 210 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 179 - -
Mtr3g3252 210 CDD RING-H2_PA-TM-RING 118 161 - -
Mtr3g3252 210 PANTHER RING-H2 FINGER PROTEIN ATL74 8 179 - -
Mtr3g3252 210 SUPERFAMILY RING/U-box 118 167 - -
Mtr3g3252 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Mtr3g3252 210 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Mtr3g3252 210 SMART ring_2 119 160 IPR001841 -
Mtr3g3252 210 Pfam Ring finger domain 118 161 IPR001841 -
Mtr3g3252 210 SMART FANCL_C_2 115 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3252 Mtr-Chr3 46405859 46407760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3252 7 169 C3H Transcription Factor Family AT3G10910 55.233 1.15e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3252 - K19040 mtr:MTR_3g094000 339.732