Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3249 ATGTCTTCCGATGACATCAATCTCACTCCTGATCAAAGAATAGAAAACGGCCTTACTTCCCCTCTCGTATTCCCAGACCACTCTCTGCGCTTCAACTGCGGCGGTGCACCACCGCGACAGGTCGGTGATCCGGTTCCTAAAACCGGCGGTTTCATCGACGACAAAATGTTCACTGTCAATCGCGATCAGTTTTTCCCTTCTCAGGGGACGGAGTTCCGCCGGAATGTTTTCTCCGACCGCGGGAACCCGTCGGATGTACTGAACTGGAGCGAGGGAACTCCAAGCAGCAATGACTCAGACGGCGAAGACGATGAAGATGACGATGAAGACGATGATGGTGGCGACACCGTAGTAGACAGACTCGTCGGTGTTGGTGACGGTAGCAAGCGCAGTTCCAATTCAATCATTGATGTTAACAATAATAATGGTGGTAATGTTACAAATAGAAAATCCCAGCTTCATTCCGCTTATGTTTCCGGTAGAGAGATAATGGGAAAGGATGGTGAAATTGTACAGTTGGTGCATAACAATGCGAGTGGTGCTACTATGGGTGGAGATGATCAGCGAGAAAGATTAGGTAAAAATCACAACTCTGTAACTGACTGTGAGGAATATTATTCACACTATCTTCAAGGTACGGAAGGGTCACCTTCTGTGCAGAAAGTTATGGTGGACGACGATGGTTGTGGATTTAGTGGAAGAAAGGATTTTGTGTATTCAAGCGAGTCAGGGGAGTCTTTGAGGGCGATTCTTTCAGATCCTGTTAGTGGAACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGTTGTACTTGTTCTCAAGCTACATTGGAGGAATCAATATCTCCAAATCTATCACTTCGAGCAGCTGTGCAGGCGTATCGTCGGGAAGAGGAATCGCAATTTTACCGGTCATCCAAAAGAAAAAGAGAAAGATTTGATCAGGGTGGTTTCGGAGAGTGTGCTGTTGTTGAATCATCAAGGACCAGAGGTGTTCAATTTCCATTTGCTGTGATGGATCGGGTTATCATAAAGGGGAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACATTAGACAATGCGGAGAGTGTAAAATTGCAGTATCGCTCCCTTGCTAAGGTTTCCGACAATCCTTCAAAACCTGTCTCCAGCAACATGGGACCTAATTGGCTTCAGATCTGCCGCACAACATCATAA 1299 0.4565 MSSDDINLTPDQRIENGLTSPLVFPDHSLRFNCGGAPPRQVGDPVPKTGGFIDDKMFTVNRDQFFPSQGTEFRRNVFSDRGNPSDVLNWSEGTPSSNDSDGEDDEDDDEDDDGGDTVVDRLVGVGDGSKRSSNSIIDVNNNNGGNVTNRKSQLHSAYVSGREIMGKDGEIVQLVHNNASGATMGGDDQRERLGKNHNSVTDCEEYYSHYLQGTEGSPSVQKVMVDDDGCGFSGRKDFVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQATLEESISPNLSLRAAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVVESSRTRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDNPSKPVSSNMGPNWLQICRTTS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3249 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 329 IPR013083 -
Mtr3g3249 432 MobiDBLite consensus disorder prediction 68 96 - -
Mtr3g3249 432 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3249 432 MobiDBLite consensus disorder prediction 68 149 - -
Mtr3g3249 432 MobiDBLite consensus disorder prediction 97 115 - -
Mtr3g3249 432 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 67 425 - -
Mtr3g3249 432 SUPERFAMILY RING/U-box 245 317 - -
Mtr3g3249 432 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 67 425 - -
Mtr3g3249 432 MobiDBLite consensus disorder prediction 1 16 - -
Mtr3g3249 432 MobiDBLite consensus disorder prediction 127 149 - -
Mtr3g3249 432 ProSiteProfiles U-box domain profile. 246 318 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3249 Mtr-Chr3 46385047 46390841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3249 201 425 Plant U-box Gene Family AT5G05230 60.776 1.88e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3249 - - adu:107470194 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3249 3 46385047 46390841 Mtr3g3249 3 46385047 46390841 ECH