Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3248 ATGTTATTCAAAATAATACCTTCATCCAAAATGAGTGTTATGAGAGTTTATCTTTTATGCTTGTTCTTCCTGTTTCTGGTGACTGTGACAGCAGTGAAAGCTGTGAATCCGTCTTTAAACGACGACGTTTTGGGGTTGATTGTGTTCAAAGCGGATATAAAAGATCCAAAAGGAAAGTTAACATCTTGGAATGAAGATGATGAAAGTGCTTGTGGTGGTAGTTGGGTTGGTGTGAAATGTAACCCTAGATCTAATAGAGTTGTGGAGGTTAATCTTAATGGGTTTTCTTTATCCGGAAGAATTGGTCGTGGGTTGCAACGGTTGCAGTTTCTTCGTCGGCTTTATTTGGGGAATAATAATCTTACTGGGAGTATAAATGCAAATATTGCTACTATTGATAACCTTAGGGTTCTTGATTTGAGCAATAATAATCTTTCTGGAGTTGTGCCTGATGATTTTTTTAGACAATGTGGGTCTATGAGAGTTGTTTCTTTGGCTAGGAACAGGTTTTCTGGGAATGTTCCTTCGAGTTTAGGTTCATGTGCAGCTATTGCTACTATTGATTTGTCTTTTAACCAGTTTTCGGGGAATGTTCCGAAGGGGATTTGGAGTTTGAGCGGACTTAGGTCTCTTGATATGTCTGATAATTTGTTGGAAGGTGAGGTTCCAGAAGGTGTTGAGGCGATGAAGAATTTGCGGAGCATTAGCTTGGCTAGGAATAGTTTTTCTGGGAAGATACCAGATGGTTTTGGGAGTTGTTTGCTTTTGAGGTCTATTGATTTTGGTGATAATTCTTTCTCTGGTAGTGTACCTAGTGATTTGAAGGAATTGGTGTTGTGTGGTTACTTTAGTTTGCATGGAAACGCTTTCTCTGGAGATGTTCCGGACTGGATTGGAGAAATGAAGGGGCTTCAGACATTGGATCTTTCTCAAAATAGATTTTCTGGTTTGGTACCAAACAGTTTAGGAAATATTTGGTCATTGAAAACGTTGAATCTTTCAGGAAATGGTTTCACTGGTAATCTACCCGAGTCCATGGTGAATTGTACAAACCTCTTGGCCTTGGATGTTAGCCAGAATTCATTGTCTGGCGATCTTCCATCATGGATTTTCAGGTGGGATTTGGAGAAGGTTATGGTGGTTAAAAACAGAATAAGTGGTAGGGCGAAAACCCCTTTGTATTCCTTGACTGAAGCTTCTGTTCAGAGTCTTCAAGTTTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACTTCTGCTGTTTCTGGTTTAAGCAGCTTGCAGGTTTTAAATTTATCATATAACTCTCTTGGAGGTCATATTCCGGCTGCAATCGGTGATTTGAAAACGTGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAATGGAAGCATACCTTCGGAAGTTGGTGGAGCTGTTTCCTTGAAAGAACTGAGTTTGGAAAACAATTTCCTTATCGGGAAAATTCCAATATCAATTGAGAATTGTTCTTCATTAAAAACTTTGATTCTGTCGAAGAACAGGCTGAGTGGGTCGATACCTTCAGCAGTTGCAAGTCTCACCAACCTGAAAACTGTGGACTTGTCATTCAACAACCTTACTGGAAACCTTCCCAAGCAATTGTCCAACCTTCCCAATCTCATAACCTTTAATTTATCTCACAACAACCTTAAGGGTGAACTACCGGCTGGTGGTTTCTTCAACACCATTTCACCTTCGTCCGTTTCTGGCAATCCATTTATTTGTGGCTCTGTTGTGAACAAGAAATGCCCTGTTAAACTCCCAAAGCCTATTGTTCTGAATCCCACCAACTTTTCACCTGACTCTGGCCCTGGATCACCTACTCCAACATTGGCTCATAAGAGAAATATCCTCAGCATTTCAGCACTCATTGCCATTGGTGCAGCTGCTTTCATTGTTATTGGTGTCATTGGCATAACTGTTCTCAACCTCCGTGTTCGGTCCACCACATCTCGATCTCCAGCTGCTCTTGCTTTTTCTGCAGGGGATGAGTACAGCCGCTCGCCAACCACAGATGCCAACTCCGGCAAGCTTGTCATGTTTTCAGGTGAACCTGATTTCAGCTCTGGTGCTCACGCTTTGCTTAACAAGGATTGCGAGCTTGGGCGTGGAGGATTTGGGGCTGTCTATCAAACAGTTCTAGGAGACGGGCGTTCAGTTGCAATAAAGAAGCTCACCGTGTCAAGCCTTGTCAAGTCTCAAGAAGATTTCGAGAGGGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTCGTTGAACTCGAAGGCTATTATTGGACTTCATCACTACAACTTCTCATATACGAGTTTGTCTCCCGTGGTAGCCTTTACAAGCATCTCCACGAAGGATCAGGCGAAAGCTTCCTTTCATGGAACGAGAGGTTTAACGTCATTCTCGGTACAGCAAAGGCCTTATCTCACTTGCACCACTCCAACATTATTCACTACAACATTAAGTCAACCAACATCCTTATCGATAGCTACGGTGAACCTAAAGTAGGAGATTACGGCCTAGCGAGATTACTACCAATGCTTGACCGCTACGTCTTGAGCAGCAAAATTCAGAGCGCGCTCGGCTACATGGCACCAGAGTTTGCCTGCAAAACAGTGAAAATTACCGAAAAATGCGATGTTTATGGGTTCGGAGTCTTGGTTTTGGAGACTGTGACAGGGAAGAGGCCTGTAGAGTATATGGAAGATGATGTGGTTGTGCTTTGTGACATGGTTAGAGGAGCATTGGATGAAGGGAGGGTAGAGGAATGCATTGATGAAAGACTACAAGGGAAGTTCCCAGTAGAGGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTACCATCTAATAGGCCAGAAATGGGTGAAGTAGTTACCATATTGGAGCTTATAAGATGCCCCTCAGGCTCAGAAGGACAAGAAGAGTTGTCAGGATGA 2970 0.4219 MLFKIIPSSKMSVMRVYLLCLFFLFLVTVTAVKAVNPSLNDDVLGLIVFKADIKDPKGKLTSWNEDDESACGGSWVGVKCNPRSNRVVEVNLNGFSLSGRIGRGLQRLQFLRRLYLGNNNLTGSINANIATIDNLRVLDLSNNNLSGVVPDDFFRQCGSMRVVSLARNRFSGNVPSSLGSCAAIATIDLSFNQFSGNVPKGIWSLSGLRSLDMSDNLLEGEVPEGVEAMKNLRSISLARNSFSGKIPDGFGSCLLLRSIDFGDNSFSGSVPSDLKELVLCGYFSLHGNAFSGDVPDWIGEMKGLQTLDLSQNRFSGLVPNSLGNIWSLKTLNLSGNGFTGNLPESMVNCTNLLALDVSQNSLSGDLPSWIFRWDLEKVMVVKNRISGRAKTPLYSLTEASVQSLQVLDLSHNAFSGEITSAVSGLSSLQVLNLSYNSLGGHIPAAIGDLKTCSSLDLSYNKLNGSIPSEVGGAVSLKELSLENNFLIGKIPISIENCSSLKTLILSKNRLSGSIPSAVASLTNLKTVDLSFNNLTGNLPKQLSNLPNLITFNLSHNNLKGELPAGGFFNTISPSSVSGNPFICGSVVNKKCPVKLPKPIVLNPTNFSPDSGPGSPTPTLAHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSTTSRSPAALAFSAGDEYSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGESFLSWNERFNVILGTAKALSHLHHSNIIHYNIKSTNILIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLETVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLQGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSGSEGQEELSG* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3248 989 Gene3D Ribonuclease Inhibitor 319 595 IPR032675 -
Mtr3g3248 989 SUPERFAMILY L domain-like 283 575 - -
Mtr3g3248 989 Pfam Protein kinase domain 706 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3248 989 Pfam Leucine Rich Repeat 134 153 IPR001611 GO:0005515
Mtr3g3248 989 Pfam Leucine Rich Repeat 475 497 IPR001611 GO:0005515
Mtr3g3248 989 Gene3D Phosphorylase Kinase; domain 1 697 779 - -
Mtr3g3248 989 Pfam Leucine rich repeat N-terminal domain 40 81 IPR013210 -
Mtr3g3248 989 SMART LRR_sd22_2 401 427 - -
Mtr3g3248 989 SMART LRR_sd22_2 205 228 - -
Mtr3g3248 989 SMART LRR_sd22_2 301 319 - -
Mtr3g3248 989 SMART LRR_sd22_2 132 153 - -
Mtr3g3248 989 SMART LRR_sd22_2 521 547 - -
Mtr3g3248 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 15 977 - -
Mtr3g3248 989 SUPERFAMILY Protein kinase-like (PK-like) 706 975 IPR011009 -
Mtr3g3248 989 Pfam Leucine rich repeat 403 462 IPR001611 GO:0005515
Mtr3g3248 989 Pfam Leucine rich repeat 284 337 IPR001611 GO:0005515
Mtr3g3248 989 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515
Mtr3g3248 989 SMART LRR_typ_2 301 324 IPR003591 -
Mtr3g3248 989 SMART LRR_typ_2 521 544 IPR003591 -
Mtr3g3248 989 SMART LRR_typ_2 205 229 IPR003591 -
Mtr3g3248 989 SMART LRR_typ_2 401 424 IPR003591 -
Mtr3g3248 989 SMART LRR_typ_2 545 569 IPR003591 -
Mtr3g3248 989 SMART LRR_typ_2 132 155 IPR003591 -
Mtr3g3248 989 SMART LRR_typ_2 425 449 IPR003591 -
Mtr3g3248 989 PRINTS Leucine-rich repeat signature 135 148 - -
Mtr3g3248 989 PRINTS Leucine-rich repeat signature 425 438 - -
Mtr3g3248 989 ProSiteProfiles Leucine-rich repeat profile. 134 155 IPR001611 GO:0005515
Mtr3g3248 989 ProSiteProfiles Protein kinase domain profile. 703 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3248 989 Gene3D Transferase(Phosphotransferase) domain 1 780 985 - -
Mtr3g3248 989 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 977 - -
Mtr3g3248 989 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
Mtr3g3248 989 SUPERFAMILY L domain-like 39 292 - -
Mtr3g3248 989 CDD STKc_IRAK 709 975 - -
Mtr3g3248 989 Gene3D Ribonuclease Inhibitor 40 318 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3248 Mtr-Chr3 46377042 46381620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3248 16 984 Receptor kinase-like Gene Family AT3G56370 66.735 0.0 1261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Mtr3g3248 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3248 - - mtr:MTR_3g093930 1881.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3248 3 46377042 46381620 Mtr3g3248 3 46377042 46381620 ECH