Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3247 ATGGTCGAGATCAGGAAAAGGAAGATCACATCCAAGTTGATTGAAAATGCTACTCAAAGAAAGATTCGCTACATGAACAGAGTGGAAGGATTGTTCACTAAAATGGAGCAGGTGAAAACCCTATGTGGTATTGAAGCATGTGCAATTGTATTTGGTCCAGGTGATTCAAGACCCTCTGTGTGGCCATCTCCTCATGTGGCCAAAAAACTAATACATAAGTTTGAATATATGCCAACGTCAGTACGATCAAGAAATATGACTGACCAACTGACTTATGTGGTGGAAAAAGGAAAAAAGCTTGACGCTAACCTTGCCAAGATCAACAAATATAACGAAGAGACACTTTTGAGAGTTTCCGTGCATCAAATTTTAAACGAAGGTAAGTCTATTTCTGATTTCAATGCTAGTATGAAAAACAACTTGATTGATTTTTTACTTGAAAGAATTAAGATCGTCAGAAAGAAAACCGATTATTTTGAAAAGGCGATGTTTCCTCTTAATAAACCTCCCTCTCTGCCACCACCGATGTCTTGCGCTATAAACAATGACAATATGACAGATTTTAGGATAAACATAAATAAAGAAGTTTTGAACCAACAACCATTATTAGATTTAGCCAAGCAAGTTGATCAAATGGGTGATGGTTTTAATCCTGGTGGTGGTGGCAGTGTTGGTGATATGTTGGTTAATCAAGAGAATTTTGAAGGTTTTTATAACAATATTTACAGCAACACGGAGATACGGCCACACACATATTTTGGTGGTGGTGTTGATCTGGCATCTTCTCAAGGCAATCTGAAAGATTTTGATAGTAGAATGGAGATAACATCAGATAAATATCTTAATGGTAGTGTTGATGATATTCTGCTCCCTAGAGGAAATTCGGGGGGTTTTGATGCTTCTCTAAGTAGCAGCATGGAGATACCGCCACATGTAAGTCATGGCGATGGTGTAGATATCATGCTTCCTCAAGGCAATTTTGGAGGGTTTGAACTTAATACAAGTGGTAACATGTGGATTCCACCACATGAAAACTCTAGTGGCAATGTTGATGCGTTGTTTCCCCATTTCAGTTTTAGAGGTCAAAACAACTTTGAAAGTTTTGATAAAAATACAGGAAGCAACATGTGGACACCATCACATGAAAATCCCAATGTTGATGTTGATGCGTTGATTTTTACACAAAATTATGGAGGTCAATGCAACTTTGAAGGTTTTGATAACATTACATATCACAACATGTGGACACCATCACATGAAAATCCAAGTGACGGTGTTGAGATGTTTATTCCGAATGTCGAAACAATAGGTCAAGGAAGCTTCAAAGGTTTTGATAACAACACAAATACTAAAATGGAGATATCACCTCATGCAAATCACAGTGGTGGTATTGATGTTGTGCTTCCTCAATGGAATTTCAAAGGTTCTGATAACAATGTAGGCACCAACGTGGAGGTATCACTGCATGCAAATTCAAGCGATGATGTTGATTTGTTATCTCATCAAGGCATTTTTGAAGGCTTTGATAACAATACAAGTAGCGTCATGTGGATTCCACCACGCAAAAATCATAGAGATGGTGATAATACGAGGATTCGTTGCCAAAACAACATTGGGGGAAATCTTGATGAATATGGCATGGGGAGTGCCAATCCAAACTCTGTTGACAATAACGATGGAAGCAACTTCAATCAAGGACTGTCTTTTGAATGA 1713 0.38 MVEIRKRKITSKLIENATQRKIRYMNRVEGLFTKMEQVKTLCGIEACAIVFGPGDSRPSVWPSPHVAKKLIHKFEYMPTSVRSRNMTDQLTYVVEKGKKLDANLAKINKYNEETLLRVSVHQILNEGKSISDFNASMKNNLIDFLLERIKIVRKKTDYFEKAMFPLNKPPSLPPPMSCAINNDNMTDFRININKEVLNQQPLLDLAKQVDQMGDGFNPGGGGSVGDMLVNQENFEGFYNNIYSNTEIRPHTYFGGGVDLASSQGNLKDFDSRMEITSDKYLNGSVDDILLPRGNSGGFDASLSSSMEIPPHVSHGDGVDIMLPQGNFGGFELNTSGNMWIPPHENSSGNVDALFPHFSFRGQNNFESFDKNTGSNMWTPSHENPNVDVDALIFTQNYGGQCNFEGFDNITYHNMWTPSHENPSDGVEMFIPNVETIGQGSFKGFDNNTNTKMEISPHANHSGGIDVVLPQWNFKGSDNNVGTNVEVSLHANSSDDVDLLSHQGIFEGFDNNTSSVMWIPPRKNHRDGDNTRIRCQNNIGGNLDEYGMGSANPNSVDNNDGSNFNQGLSFE* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3247 570 PANTHER MADS BOX PROTEIN 9 251 - -
Mtr3g3247 570 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 9 251 - -
Mtr3g3247 570 MobiDBLite consensus disorder prediction 547 570 - -
Mtr3g3247 570 SUPERFAMILY SRF-like 6 97 IPR036879 GO:0003677|GO:0046983
Mtr3g3247 570 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 54 IPR002100 GO:0003677|GO:0046983
Mtr3g3247 570 MobiDBLite consensus disorder prediction 543 570 - -
Mtr3g3247 570 ProSiteProfiles MADS-box domain profile. 4 52 IPR002100 GO:0003677|GO:0046983
Mtr3g3247 570 CDD MADS_SRF_like 6 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g3247 570 Gene3D - 17 99 IPR036879 GO:0003677|GO:0046983
Mtr3g3247 570 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3247 Mtr-Chr3 46366745 46368597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3247 7 154 Type I MADS-box Gene Family AT5G27960 32.692 3.32e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g3247 SRF-TF 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3247 - - mtr:MTR_3g093900 1169.45