Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3245 ATGGCTTCTGATTCTTCTTCTTCAAAGTGGGTGATGGAAAATGGTGACATTCCTCATGTTCTGGCTGTTGATGACAATATCATTGATCGCACACTTGTTGAGAAACTTCTGAAGAATTCCTCTTGCAAAGTGACAACTGCTGAAAATGGGCTGAAGGCATTGGAGTATTTGGGCTTGGCAAGTGGTGCTGAACAGAAGAACACTTTGGAGAATGGAGGACCCAAAGTGAACTTAATCATCACTGACTACTGCATGCCAGGGATGACTGGCTATGAGTTGCTTAAGAAAATTAAGCAATCATCAATGAAGGAAGTTCCTGTTGTGATCATGTCATCTGACAATATACCAACAAGGATCAACAAGTGTATGGAAGAAGGGGCTCAGATGTTCTTATCGAAGCCTGTCAAACAATCTGATGTAAAACAACTGATAGGCCAGCTGATGAATTTGGGAAGGCTCCAAAAGAATTGA 471 0.4161 MASDSSSSKWVMENGDIPHVLAVDDNIIDRTLVEKLLKNSSCKVTTAENGLKALEYLGLASGAEQKNTLENGGPKVNLIITDYCMPGMTGYELLKKIKQSSMKEVPVVIMSSDNIPTRINKCMEEGAQMFLSKPVKQSDVKQLIGQLMNLGRLQKN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3245 156 Gene3D - 19 156 - -
Mtr3g3245 156 ProSiteProfiles Response regulatory domain profile. 19 148 IPR001789 GO:0000160
Mtr3g3245 156 SMART REC_2 18 144 IPR001789 GO:0000160
Mtr3g3245 156 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 150 IPR045279 GO:0009736
Mtr3g3245 156 Pfam Response regulator receiver domain 20 144 IPR001789 GO:0000160
Mtr3g3245 156 CDD REC_typeA_ARR 20 143 - -
Mtr3g3245 156 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 8 150 - -
Mtr3g3245 156 SUPERFAMILY CheY-like 18 155 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3245 Mtr-Chr3 46344070 46345669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3245 19 149 Response Regulator Gene Family AT3G56380 70.677 3.48e-61 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g3245 Response_reg 5.9e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3245 K14492 - gmx:100499827 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3245 3 46344070 46345669 Mtr3g3245 3 46344070 46345669 ECH