Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3243 ATGGAGAAGGAGAAAGAGAAAGAGTTGGTCGAATTGTACGAAGCCGCGAAGAAAGCGGCGGATGCTTCCACCTCCACCGATAATAGTCCCAGCGAAGAAACCCGATGCCTCGATGCGCTTGAACAGCTCAAGAATTTTCCGGTCAATTACAAAATTCTCGTCAATACCCAGGTGGGAAAACATCTTAAAACTCTCACCAAGCATCCCAGGGAGAACATTCGGGCTTTTGCTGTTGACTTAATTGCGATATGGAAAGACGTAATTATCAAGGAAACAAGTAAAAATAAGAATGGGGCCTCTGATTCTAAGGTTGAGTCAACGAATGGGGAGAGAGCTAAAGCTGGCAAATTGCAAAAGAGTCCTTCAGTGAAGGTTGAGAAAGGTGAAAGTGCCAAGGTGGAGAAAGTTAATGGGAATGGTTCATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTTAAAATTGAGAAAACTGATCGTACCTCCAACATCAAAGCGAAGGAGGAAAAACCAGTATCTGCGGCAAAGAAAATTTCATCCAGCGCTGCTGCTCCACCAAAGCTGAAGACTATGATCAAATCTAACGATTCAGCGCGAGACAAAATAAGGGAACTTCTCCGAGATGCTTTAGCGAAGGTCTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTGAATGCATGTGACCCTATTCGTGTGGCAGTGACAGTGGAGTCCGTATTATTTGAAAACTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCCTTAATGTTTAATCTTAAGGATCAGAAGAACCCAGATTTCCGGAGAAAAGTTCTGCTTGGTACTGTTGAGCCACAGCGGCTGGCCGTCATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAAGAGAATGAGAAAATCGAGCAGAAAGCTTTGTTCGACTGTGAGCGCGGACTTCAACCAAAAGCTACTACTGATCAATTTAAGTGTGGTCGGTGTGGACAAAGGAAAACCACCTATTACCAAATGCAAACTCGCAGTGCTGACGAACCTATGACAACCTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1110 0.4423 MEKEKEKELVELYEAAKKAADASTSTDNSPSEETRCLDALEQLKNFPVNYKILVNTQVGKHLKTLTKHPRENIRAFAVDLIAIWKDVIIKETSKNKNGASDSKVESTNGERAKAGKLQKSPSVKVEKGESAKVEKVNGNGSSKLSSGNVKAQNVDVKIEKTDRTSNIKAKEEKPVSAAKKISSSAAAPPKLKTMIKSNDSARDKIRELLRDALAKVFEEADEDMMDEVNACDPIRVAVTVESVLFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGTVEPQRLAVMSSAEMASEQRKQENEKIEQKALFDCERGLQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3243 369 MobiDBLite consensus disorder prediction 165 184 - -
Mtr3g3243 369 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 369 - -
Mtr3g3243 369 ProSiteProfiles TFIIS N-terminal domain profile. 14 91 IPR017923 -
Mtr3g3243 369 SUPERFAMILY Zinc beta-ribbon 309 367 - -
Mtr3g3243 369 SMART TFS2_5 12 90 IPR003617 GO:0005634
Mtr3g3243 369 SUPERFAMILY Elongation factor TFIIS domain 2 189 299 IPR036575 GO:0006351
Mtr3g3243 369 Gene3D - 163 297 IPR036575 GO:0006351
Mtr3g3243 369 ProSiteProfiles Zinc finger TFIIS-type profile. 327 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mtr3g3243 369 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 30 103 IPR035441 -
Mtr3g3243 369 CDD Zn-ribbon_TFIIS 322 368 - -
Mtr3g3243 369 Coils Coil 191 211 - -
Mtr3g3243 369 Pfam Transcription factor S-II (TFIIS), central domain 198 315 IPR003618 GO:0006351
Mtr3g3243 369 SMART Cys4_2 329 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mtr3g3243 369 CDD TFIIS_I 13 88 - -
Mtr3g3243 369 Gene3D - 298 369 - -
Mtr3g3243 369 Pfam TFIIS helical bundle-like domain 39 87 IPR017923 -
Mtr3g3243 369 TIGRFAM TFSII: transcription elongation factor S-II 25 369 IPR006289 GO:0003676|GO:0005634|GO:0006368
Mtr3g3243 369 MobiDBLite consensus disorder prediction 94 148 - -
Mtr3g3243 369 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 103 IPR035441 -
Mtr3g3243 369 Coils Coil 291 311 - -
Mtr3g3243 369 ProSitePatterns Zinc finger TFIIS-type signature. 331 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mtr3g3243 369 SMART mid_6 203 307 IPR003618 GO:0006351
Mtr3g3243 369 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 6 369 - -
Mtr3g3243 369 ProSiteProfiles TFIIS central domain profile. 201 324 IPR003618 GO:0006351
Mtr3g3243 369 Pfam Transcription factor S-II (TFIIS) 329 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mtr3g3243 369 PIRSF TFIIS 4 369 IPR035100 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mtr3g3243 TFIIS_M 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3243 K03145 - gmx:100811982 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3243 3 46319420 46322016 Mtr3g3243 3 46319420 46322016 ECH