Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3235 ATGATTCCTCGTACGTGGCAACGGTTTCGAGCTGCTGCTTCTCAAGAAGAGGGTGGTTCTTCTTCTCGGAATGTGATGTTTTCTGAAGAGGCTCACCGTGCTATGGCGGCGGATAGAGTTCGTTCAGTTCCTTTGGCTGATGTTGTCGGTGGAGTTAGCGATAGCTTCTCCACTTATTCCTGGTTTGATTTTCAGCAGATTGCTAAGATGGTTGATCAGATTCTTCCTTTTTCGCTCTTGTTGTTGATTGTTTTGATCCGAAGGCATATGGAATATTTCTTTGTCACAATCGGTGCAATAGCTGTAATGTTCAGGTCAAATGAACTTGTTAAGAAACAGACTGCTCTGAAGGGAGATCGGAAAGTCTCCGCTCTTCTTGGTCTTTCCTTTTCCTTCATGCTGTACGTGATATGCATTTACCAGTTATATGGAAATGATGATGTTTTATTCCCTCTGGCCATGTTTCCGCCAGAAACAACACCATCTTTCTGGAAGGCAATATTCATCATTTTGGTTAATGATACAATGGTGCGGCAAGTGGCAATGGCTTTCAAGTGTTTGTTGCTGATTTACTACAAAAATGGCAGAGGTCATAACTTCCGTCATCAGGGTCAAATGTTAACTCTGGTTGAGTACACACTGCTGCTATATCGTGCTTTCTTGCCAGCACCCGTTTGGTACCGATTTTTCTTTTACATGGACTTTGGAAGTCTCTTCTCATCAATAATTACAGGATTGTATCTAACGTTCAAGTTAACATCTGCAGTTGACAAGGTCACATGCGTACTTTTTGCCTTAAAAGCATTATCAGAAGACGAAATTCATTATGGTGTTTATGCTACACCAGAACAGGTAAGTGCTGCTGGTGATCTGTGCACTATATGCCAAGAGAAGATGCATGTTCCTATCCTGGTTCGCTGTGGACACATGTTCTGCGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAATGTACTTGCCCGATGTGCAGGACATTGGTAGTACCGGCTCATCTGCGGACCTTCGGAGACGGATCAACAAGTTTGTTTTATCAGTTCTGTTGA 1062 0.4294 MIPRTWQRFRAAASQEEGGSSSRNVMFSEEAHRAMAADRVRSVPLADVVGGVSDSFSTYSWFDFQQIAKMVDQILPFSLLLLIVLIRRHMEYFFVTIGAIAVMFRSNELVKKQTALKGDRKVSALLGLSFSFMLYVICIYQLYGNDDVLFPLAMFPPETTPSFWKAIFIILVNDTMVRQVAMAFKCLLLIYYKNGRGHNFRHQGQMLTLVEYTLLLYRAFLPAPVWYRFFFYMDFGSLFSSIITGLYLTFKLTSAVDKVTCVLFALKALSEDEIHYGVYATPEQVSAAGDLCTICQEKMHVPILVRCGHMFCEECVSEWFERECTCPMCRTLVVPAHLRTFGDGSTSLFYQFC* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3235 353 SUPERFAMILY RING/U-box 291 336 - -
Mtr3g3235 353 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 54 352 - -
Mtr3g3235 353 CDD RING-HC_RNFT1_like 291 330 - -
Mtr3g3235 353 ProSitePatterns Zinc finger RING-type signature. 307 316 IPR017907 -
Mtr3g3235 353 SMART ring_2 292 329 IPR001841 -
Mtr3g3235 353 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Mtr3g3235 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 337 IPR013083 -
Mtr3g3235 353 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 54 352 IPR044235 GO:0061630|GO:1904294
Mtr3g3235 353 Pfam Zinc finger, C3HC4 type (RING finger) 290 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3235 Mtr-Chr3 46253494 46262282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3235 41 351 C3H Transcription Factor Family AT5G01960 63.344 7.20e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3235 - K22379 gmx:100784614 471.855