Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3226 ATGGATACTCTGAAAGGTGCGATTCCAGAGAAACTAAAACAAGCAATTAGGGATAGCACTGTAAACACTCTTCAAGACACATGTTCTTCTCTTCATCACTTCTTTCTTCATTTCGACCCTTTTCACCAGACTGTGACTCAACTTGCAGACCCTAGTTATGCTCTTTGCGGGAAAAGCAAAGAAGCTGCGTTGAAGTATAAGCAACTTGGTAATCAATGCTTCTCTAATGCTGATTATGCAAATGCTTTAGATTATTATACCCAGGCATTGCAAAAAGCTCCTTTTGAAGTTGGTGAAATTGAAAATAATTTCATTGCAACATTGTATATTAATCGAGCTACTGTATTGCATAAAATGAATCTTTTAGTAGAATGTTTGCGAGACTGTGATCGAGCTCTTCAGATATGTCCGAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATATTGCATTTGGAAATAATAGAGATGCAATCTGTGACTTAAATATAGCTAAGAGTGTCGAATCATCAACAGGAGGGAAGCGACAAATAGAATGTGAGCTGAAAATTATTTTAGACCAATCCAAGAGCACAGATATAGTAGTACAGCCGCGACAGAAGGAGAACAGCTTGAGTACTACGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCGTACCTGATAAAGGAAGAGGCATGGTGCCGCCATCTGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCATATGCTATGGTAATATTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCATTGTATTGCTCCCACCAATGCCAAATAAAGGCAGGTGGGCAAATGTTCATGATATCCACAGAAGATAATTACATTCTTAAAAACTTACCCAACGATCTTGCTGAATATGCTGCCGAAGTGATTCAATACAATGATTGTGAGCAAAAGATTGGTAATGTTACTGAACATAAACATGAATGTCAAGGAGTACATTGGCCTGCTGTACTGCCTTCTGACATAGTTTTGGCTGGCAGACTTCTAGCGAAGTTTTTGTCAAAGAACTCATCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTAGATTCACATATATACGCCATTGTATTGTTATATTGTCTTAAACATTCTTATGGAGCTATGCTTGCCATCAATGGAATCTCTATATTACAGGTGGTCATACTTATTTCTCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTGTCAGATCAGTCTGGAGGATTTCCATTTCATTCCAGTGTACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGTTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCGCGCACACTCTATTTACGAACAACACAAGCCGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTACGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTAAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATCGTCCTCAATGCTTTTCATTGTGTGAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAATGTGAAAAGCAGAAAATTAAACACCTAGCTGTTGCTGATAAAGTTATCAAGAACGATGACATCTATGAAGTTTGTCTTCATGCATTTAACCAAAATGACGCTTCTATTCATATTCAACCCGGATTCTGTTTGAAATGCAGTTCTTACCGTGATCTGGAGTCTTCACGTGCAACAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATACTGTCAAAAGAAATTTCAAATACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTTAGATCAAATTTGCATGCATGCAATAAGGTTATTGCAGAGGCAGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTGGGAGAATTACAATTATCGGCGGATCATTGTAAAGCATCTATTCAGATTTTGGAGAAGATATATGATCCTGATGATATCGTTATTGCTTATGAACTTGTGAAGCTTTCATCCGTCCAACTTTCCTTGGGTGACAATAGTGCTGTCAACAGCATTGGTCGAATAGGTGCTATTTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTTCCTTATCTTCAGTACCTTAGGAGAGAAATTTAG 2337 0.3851 MDTLKGAIPEKLKQAIRDSTVNTLQDTCSSLHHFFLHFDPFHQTVTQLADPSYALCGKSKEAALKYKQLGNQCFSNADYANALDYYTQALQKAPFEVGEIENNFIATLYINRATVLHKMNLLVECLRDCDRALQICPSYSKAWYRRGKANIAFGNNRDAICDLNIAKSVESSTGGKRQIECELKIILDQSKSTDIVVQPRQKENSLSTTGEMPQIKLQSVSVPDKGRGMVPPSDVSPGSLVHAEEPYAMVILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQMFMISTEDNYILKNLPNDLAEYAAEVIQYNDCEQKIGNVTEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNSSGDITSFVEKLELSHCYEHMPFESKLDSHIYAIVLLYCLKHSYGAMLAINGISILQVVILISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSSVHLTSNVEQVRVGKAIYKVGSLFNHSCQPNVHAYFLSRTLYLRTTQAVAAGCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLECEKQKIKHLAVADKVIKNDDIYEVCLHAFNQNDASIHIQPGFCLKCSSYRDLESSRATVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHACNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKIYDPDDIVIAYELVKLSSVQLSLGDNSAVNSIGRIGAIFSRYYGLHADLVFPYLQYLRREI* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3226 778 Pfam SET domain 454 521 IPR001214 GO:0005515
Mtr3g3226 778 Gene3D SET domain 228 258 IPR046341 -
Mtr3g3226 778 Gene3D - 259 291 - -
Mtr3g3226 778 Gene3D Tetratricopeptide repeat domain 39 194 IPR011990 GO:0005515
Mtr3g3226 778 Gene3D Tetratricopeptide repeat domain 528 777 IPR011990 GO:0005515
Mtr3g3226 778 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Mtr3g3226 778 SUPERFAMILY TPR-like 59 166 IPR011990 GO:0005515
Mtr3g3226 778 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 777 - -
Mtr3g3226 778 ProSiteProfiles SET domain profile. 215 521 IPR001214 GO:0005515
Mtr3g3226 778 SMART tpr_5 63 96 IPR019734 GO:0005515
Mtr3g3226 778 SMART tpr_5 106 139 IPR019734 GO:0005515
Mtr3g3226 778 SMART tpr_5 685 718 IPR019734 GO:0005515
Mtr3g3226 778 SMART tpr_5 140 173 IPR019734 GO:0005515
Mtr3g3226 778 SUPERFAMILY SET domain 220 546 IPR046341 -
Mtr3g3226 778 Gene3D SET domain 422 520 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr3g3226 SET 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3226 K24634 - gmx:100783548 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3226 3 46161005 46169168 Mtr3g3226 3 46161005 46169168 ECH