Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3212 ATGAAGACCATCCTCTCCTCCGAAACCATGAACATCCCTGACGGCGTTAGCATCAAGGTTAACGCTAAGGTCATCGAAGTCGAAGGACCTCGCGGGAAACTTGTTCGTGATTTCAAGCATCTCAATCTCGATTTTGATCTCATCACCGATGAAGAAGGGAAGAAGAAGCTGAAGATCGATGCCTGGTTTGGTTCCAGGAAAACCTCCGCCGCCATCAGGACAGCTCTCAGCCACGTTGAGAATCTCATCACTGGTGTCACCAAGGGATTCCGCTACAAGATGAGGTTTGTGTATGCTCATTTCCCCATCAACGCTAGCATCACCAATGACAGCAAGTCGATTGAGATCCGTAACTTTCTTGGCGAGAAGAAGGTGAGGAAAGTGGATTTGCTTGATGGAGTTTCAATTGTTCGATCTGAGAAGGTGAAGGATGAGGTTGTTTTGGATGGAAATGACATTGAACTTGTTTCTCGGTCTTGTGCCCTTATTAATCAGAAATGCCATGTTAAGAAGAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGGGTCGGTGGTAACTGAAGAATAG 582 0.4536 MKTILSSETMNIPDGVSIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDEEGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYAHFPINASITNDSKSIEIRNFLGEKKVRKVDLLDGVSIVRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGSVVTEE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3212 193 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 193 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Mtr3g3212 193 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 Gene3D - 90 193 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mtr3g3212 193 PANTHER 60S RIBOSOMAL PROTEIN L9-1 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3212 Mtr-Chr3 46027360 46028792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3212 1 193 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 87.113 1.63e-122 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3212 K02940 - gmx:100500079 353.984