Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3188 ATGGGTGAGGTTGTAATGAGTGGTGAGAAAATAGTGAGAGTGGAAGAAGAAGAAGAGAAGGTGAGGGAAGAAGAAGGGAGCGGAGGAACTGAGAGTAGAGGTGCTGGTGGTGGTGGTGAAATGAAAGGGCTTATGAGGTGGGAGAAATTCTTGCCAAAAATGGTTTTGAGGGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATAACAGCACTTCTTAGAAAATGCAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATACTCAAAGGAAGACCGCGCAGTATTGATCTAATACTTACAGAAGTCGATTTGCCAGCCATATCCGGCTATGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAAAGCATCCCTGTCATAATGATGTCGTCGCAAGATTCAGTTAGCACAGTATACAAATGCATGTTGAGAGGTGCAGCTGACTATCTTGTTAAGCCAATTCGAATAAATGAACTAAGGAATTTGTGGCAACATGTTTGGAGAAGACAAACACAGTCAGCCGCAACCGCTGGCATAAATGGCCCTCAAGATGAAAGTGATACACAACAGAAGTTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCTGGTGGTGATGCTGCTTGCATTCAAAGGAATAAGGACTTAATTGAGAAAGGAAGTGACGCACAGAGCTCTTGTACAAGGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCATGAATTTTCTCAGCTGAAATGTGCGGAAGCATATCCAAGTGAAATAAAGACACGAGAACTTGACATTCATTTAGGCCAGGCTGTGATCGCGCAGGACAGTCACGCCGGAGGATTAAGCGTGGCTAACTGCAATAATGGAGTGGCAAGCACAAATAACTGTAAAAATGGAGAGACAGGTGCAAATAATTGCAAGGACGGAGATGATCAAGAGCATTTTAGGAATGCTAGCATCAGTGGTGAGGTTCATGACAATCACTATGTTCAAATTTACTCTACTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTGATCCGAATTGCAGTCTCAAAAATTCATCAATTGATTGCACAGGCAAGTTTGACCATTCTCCACAGTTGGATCTTTCTCTCAGAAGCTCTCATCCCAGCAACTTTGAGAAGGATCTCACCGAAGAAAGGCACACCCTTATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAATAGGCAATTGCAAGCATCACCTGCCGTAGTAATTAACTTCTCTGATCAACCAAGAGAACAAAAAACAAATAATGAGAACCATAACTCAGATAGTTCAATACCAAGTATGCAAAAAGAATCTGAACTTGCAACTTCACATTCCCAGCAAAGGCATTCTCTCCCAATTCCTGTGAAAGGTGTAAGGTTCAATGATCTTTGTATGGCCTATGGTTCAACACTTCCACCAGGGTTTCGTACACAATCAGGTCCACCATCAATGCCCGGTTCAGTTGTGTTTCTCGAACAAAACTTTCAAGCAGATGCATTTTATCAGTCAAATGTTAAACAAAATAATTCAGAGCAGCTTTACGAACCTCGCGGTCCAAATGGAAACAGTACTCCAAACCAAATTATGTATACACAGGAACACAAGTCAGAACATCCAGAGGATCAAAGACTTATCTCCCCTACAACTGATCAAAGTGTATCCAGTAGTTTTTGTAATAATGGAAATGCCAGCAATTTTAACAGCATTGGTTATGGAAGTAATTGTGGAAGTAGTGGCAATGTTGAACAAGTTGCCACTTTCAGAACAGCAGCAGTTTCAGAGGGAAAGAATGAAGAACTCACAAACAGTGGATATTCACATCGAGCTATGCTACGAGAAGCAGCTCTAAACAAGTTCCGTTTGAAACGAAAAGAGAGATGTTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAACCGAATCCTGATTCTCTTTCTGGAGAAAAAGATTGCTAA 2058 0.4169 MGEVVMSGEKIVRVEEEEEKVREEEGSGGTESRGAGGGGEMKGLMRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAISGYALLTLIMEHDICKSIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHVWRRQTQSAATAGINGPQDESDTQQKFEATAENNAASNRSGGDAACIQRNKDLIEKGSDAQSSCTRPNMEAESGLVDNMHEFSQLKCAEAYPSEIKTRELDIHLGQAVIAQDSHAGGLSVANCNNGVASTNNCKNGETGANNCKDGDDQEHFRNASISGEVHDNHYVQIYSTTKEAIDLIGAFRTDPNCSLKNSSIDCTGKFDHSPQLDLSLRSSHPSNFEKDLTEERHTLMHSNASAFKRYTNRQLQASPAVVINFSDQPREQKTNNENHNSDSSIPSMQKESELATSHSQQRHSLPIPVKGVRFNDLCMAYGSTLPPGFRTQSGPPSMPGSVVFLEQNFQADAFYQSNVKQNNSEQLYEPRGPNGNSTPNQIMYTQEHKSEHPEDQRLISPTTDQSVSSSFCNNGNASNFNSIGYGSNCGSSGNVEQVATFRTAAVSEGKNEELTNSGYSHRAMLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQPNPDSLSGEKDC* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3188 685 Gene3D - 54 289 - -
Mtr3g3188 685 MobiDBLite consensus disorder prediction 182 216 - -
Mtr3g3188 685 MobiDBLite consensus disorder prediction 15 40 - -
Mtr3g3188 685 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 8 662 - -
Mtr3g3188 685 MobiDBLite consensus disorder prediction 431 473 - -
Mtr3g3188 685 ProSiteProfiles Response regulatory domain profile. 57 175 IPR001789 GO:0000160
Mtr3g3188 685 SMART REC_2 56 171 IPR001789 GO:0000160
Mtr3g3188 685 MobiDBLite consensus disorder prediction 657 685 - -
Mtr3g3188 685 Pfam Response regulator receiver domain 58 169 IPR001789 GO:0000160
Mtr3g3188 685 MobiDBLite consensus disorder prediction 15 29 - -
Mtr3g3188 685 CDD psREC_PRR 58 161 - -
Mtr3g3188 685 SUPERFAMILY CheY-like 56 182 IPR011006 -
Mtr3g3188 685 ProSiteProfiles CCT domain profile. 631 673 IPR010402 GO:0005515
Mtr3g3188 685 MobiDBLite consensus disorder prediction 443 469 - -
Mtr3g3188 685 Pfam CCT motif 631 673 IPR010402 GO:0005515
Mtr3g3188 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 662 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3188 Mtr-Chr3 45872556 45876673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3188 613 673 Response Regulator Gene Family AT5G24470 68.657 2.08e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Mtr3g3188 Response_reg 6.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3188 K12130 - gmx:100777119 917.916