Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3179 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCGCTGATATAAGAGAATCAGAAATTGAAGATCTGTTCTACAAGTATGGCCGCATAATGGAAATTGAATTGAAGGTTCCTCCTCGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCTGAAGATGCAATTCGGGGTCGTGATGGTTACAACTTTGATGGTTGTCGATTAAGAGTGGAGCTCGCCCATGGAGGCAGAGGGCCATCATCAAGTGACCGACGTGGGTATGGTGGTGGTGGCGGCGGCGGTGGAAGAGGCGGCGGCGGTGATAGTGCTGGTGGGGGCCGTTTTGGTGTCTCTCGCCATTCTGAATTTCGAGTTATTGTTCGAGGACTCCCATCTTCTGCATCCTGGCAGGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGCTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTACGATGACATGAAATATGCTATTCGGAAATTGGATGACACTGAGTTCAGAAATCCTTGGGCGAGATCATATATTCGGGTTAGGAAGTATGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCGAAAAGGGCCAGAAGGTCTTTGGAGCGATCTGTTTCTAGGTCACGGTCTATTTCCAGATCCAGATCAGCATCACCAATCAAGCCTGCCAGGCCACGATCACCATCACGTTCAGCGTCTCCGCGATCACCGCCGCGATCACCACGCCAGGTTCTGTCTGGTAGCGGTTGA 819 0.4994 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDSAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARRSLERSVSRSRSISRSRSASPIKPARPRSPSRSASPRSPPRSPRQVLSGSG* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3179 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mtr3g3179 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
Mtr3g3179 272 Gene3D - 123 200 IPR012677 -
Mtr3g3179 272 MobiDBLite consensus disorder prediction 81 113 - -
Mtr3g3179 272 CDD RRM1_SF2_plant_like 8 79 - -
Mtr3g3179 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 258 - -
Mtr3g3179 272 Gene3D - 2 120 IPR012677 -
Mtr3g3179 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mtr3g3179 272 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 258 - -
Mtr3g3179 272 CDD RRM2_SF2_plant_like 123 198 - -
Mtr3g3179 272 MobiDBLite consensus disorder prediction 198 272 - -
Mtr3g3179 272 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mtr3g3179 272 SMART rrm1_1 124 197 IPR000504 GO:0003723
Mtr3g3179 272 SUPERFAMILY RNA-binding domain, RBD 6 190 IPR035979 GO:0003676
Mtr3g3179 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3179 Mtr-Chr3 45761597 45766798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3179 2 207 Eukaryotic Initiation Factors Gene Family AT4G34110 22.791 3.01e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3179 K12890 - gmx:100800653 350.132