Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3178 ATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTTCCAGTGAGAATTTGGACAACAGTGTTGTTTCATCGGACTCAACTGAGGTTGTTGAGAAATCCAAACCCAAAACCGATCAGAATCTGAACACCAACTCCGTTAACACCAACGTTGTTGGTGTGATCAATCATCAACAACAAGACAGTGTTCCAAATGGTAACCATGGTTTCATCGCTCATCAAATGAGTCAGATGCATGGAAATGGGGTTCAGAATCAGCATTTGGTTGATGGGTATGGTGGGAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAGTTGCTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTGCCACCTTCACTGGTTACTAATTATCATGGCTACTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAATAACAATTTTATGCTTCAGAATAATTTTGGAAATGCTAATGCTAATGCTACTGCTAATAATGGACAGATTAACAGAAGGAGGAAGAATGGCTATAATAATGCGAAGCGAAGAGTGTATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGAGTATGCGGGGATCCCAATTCCATTCTTCGGTTTGCATTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTAAGAGTGCTGCCTTCAAAGACTGCTATTGCACCTGTTAATCCAACTTTTTTGCCCAGGTCTGAAGATGAAAGAGAGATGTGCACCAGAACAATTTATTGCACAAATCTCGACAAGAAGCTTACTCAAGCAGATGTCAAGCACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGTCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTGGAGTTTGCAGTGGCTGAGAGTGCAATTGCTGCACTGAGCTGTAGTGGTGTGGTTTTGGGTTCACTTCCCATAAGGGTAAGTCCATCAAAGACACCAGTCCGAGCTCGTGCAGTTCGTACTCCCATGCACTGA 1155 0.4364 MAVAENVGTKIDSSSENLDNSVVSSDSTEVVEKSKPKTDQNLNTNSVNTNVVGVINHQQQDSVPNGNHGFIAHQMSQMHGNGVQNQHLVDGYGGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAAGPNAGFGYPNNNFMLQNNFGNANANATANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARAVRTPMH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3178 384 CDD RRM1_CID8_like 197 276 IPR034823 -
Mtr3g3178 384 MobiDBLite consensus disorder prediction 8 29 - -
Mtr3g3178 384 SUPERFAMILY RNA-binding domain, RBD 184 276 IPR035979 GO:0003676
Mtr3g3178 384 SUPERFAMILY RNA-binding domain, RBD 287 377 IPR035979 GO:0003676
Mtr3g3178 384 Gene3D - 156 276 IPR012677 -
Mtr3g3178 384 Gene3D - 283 378 IPR012677 -
Mtr3g3178 384 CDD RRM2_CID8_like 292 373 IPR034825 -
Mtr3g3178 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 384 - -
Mtr3g3178 384 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 384 - -
Mtr3g3178 384 MobiDBLite consensus disorder prediction 1 45 - -
Mtr3g3178 384 SMART rrm1_1 200 270 IPR000504 GO:0003723
Mtr3g3178 384 SMART rrm1_1 297 368 IPR000504 GO:0003723
Mtr3g3178 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 372 IPR000504 GO:0003723
Mtr3g3178 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 274 IPR000504 GO:0003723
Mtr3g3178 384 Pfam Ataxin-2 C-terminal region 111 125 IPR009818 -
Mtr3g3178 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 264 IPR000504 GO:0003723
Mtr3g3178 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 365 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3178 Mtr-Chr3 45745581 45751231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3178 198 360 Eukaryotic Initiation Factors Gene Family AT1G34140 27.545 6.73e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3178 - - gmx:106794116 550.436