Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3177 ATGGCTGTTGCTGAAAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACCACGCTGTATCATCTGACTCAACTGAGGTGGAGAAATCGAAACCGAGGACCGATCAGGATGTGAACAACAACAGTGTGTTCAACCATCAACACCAAAATGGTAATTATAGCTTCAAGACTCATCAAATGGGTCAGATGCATGCTAACGGGGTTCAGAACCATCAGTTTGTGGTGAACAATGATGGATATGTGATGAATGGTCTCAGAAATGGTGAGAACGGGGGCGAGAGTTTTAAGCGTGAAATGAGGGATTTGGAAGAGTTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCTCCATCGCTAACAAATAACCATGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTAACAATTTTATACTTCTTAATAATTATGCTAATGCTAACGGCCAAACTAACCGTAGGAGGAAGAATGGCTACACTACTAATGGAAAGCGAAGAGCGAATCATAAAGTGGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGATATCGATCAGCTGGTTACCGAAGAGCAGCTGGCATCTCTCTTTCTGAATTGCGGCCAGGTTGTTGATTGTCGGGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCCTTCATTGAATTTACAGATGAAGAGAGTGCAAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGGTATTACCCATTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCTACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAACATTGACAAGAAGCTGACTCAAGCAGATGTGAAACACTTCTTTGAATCTATCTGTGGAGAGGTCCATCGACTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTTGCAGTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGCAGTGGCGTGATTTTGGGTGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCAGTCCGTGCTCGTTCTTCTCCTCGTAGTCCATGA 1131 0.4492 MAVAENVGAKIGSSSQNLDNNNNHAVSSDSTEVEKSKPRTDQDVNNNSVFNHQHQNGNYSFKTHQMGQMHANGVQNHQFVVNNDGYVMNGLRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNFILLNNYANANGQTNRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVRARSSPRSP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3177 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Mtr3g3177 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 353 IPR000504 GO:0003723
Mtr3g3177 376 SUPERFAMILY RNA-binding domain, RBD 280 373 IPR035979 GO:0003676
Mtr3g3177 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Mtr3g3177 376 CDD RRM2_CID8_like 285 366 IPR034825 -
Mtr3g3177 376 SUPERFAMILY RNA-binding domain, RBD 182 268 IPR035979 GO:0003676
Mtr3g3177 376 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 371 - -
Mtr3g3177 376 CDD RRM1_CID8_like 190 269 IPR034823 -
Mtr3g3177 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Mtr3g3177 376 MobiDBLite consensus disorder prediction 1 55 - -
Mtr3g3177 376 Gene3D - 276 372 IPR012677 -
Mtr3g3177 376 Gene3D - 153 269 IPR012677 -
Mtr3g3177 376 SMART rrm1_1 193 263 IPR000504 GO:0003723
Mtr3g3177 376 SMART rrm1_1 290 361 IPR000504 GO:0003723
Mtr3g3177 376 MobiDBLite consensus disorder prediction 9 29 - -
Mtr3g3177 376 Pfam Ataxin-2 C-terminal region 112 126 IPR009818 -
Mtr3g3177 376 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3177 Mtr-Chr3 45723254 45727705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3177 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 1.02e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3177 - - gmx:106794116 599.356