Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3176 ATGTCACATACAAGGCAAAACAAGATAACGATGAGTCTCAACGTTGTTCCTAAACATGTTGGTGACACAACTTATACGAAGATTTTTGTTGGAGGGTTAGCTTGGGAGACCAAAAGAGACACACTCAAACGTTACTTTGATCAGTTTGGTGATATTTTAGAAGCTGTTGTCATCACTGACAGAACCACTGGAAAATCAAAAGGATATGGCTTTGTTACCTTCAAGGATCCAAATTCTGCTATACTAGCTTGTCAAAATCCTAATCCTATGATTGATGGAAGAAGAGCTAATTGTAATCTTGCATATCAAAAACCTGATCCATCTTTAACAGGAAAGCAGAAATTCAATAGTCCTTCAAGGAATACTTCACCAATCCAAGTTCAAGGTTCCTCAGCTTATTACAATCAACATATACCACAATATGCATTTCCTTATCCACTTTACAGGTACCCTCACCCTGGTTATCCTCGTCCACAAGACATATATGAAATGCAGAGCTATAATAATGCATATGGTGGTGGACCTCAATTTCCATTTCGCTGGTTCCCAGCATATTACCAACCATATTATGGCCTTAGTAGACAGTTAATTCCAACAGCATATATGAAAAAGACACAATTCCATGATGTTGTTGGCATATCAGAACCTATTTCACCTTCAACTTCAATTTCCAGCACTGGAGTTATCACAGAAACAGTAGGTCCAACAAGAGTGGTGGAAGTAGAACCTTCCAAAGATCAAACAACTTCAGCTTAA 756 0.381 MSHTRQNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNLAYQKPDPSLTGKQKFNSPSRNTSPIQVQGSSAYYNQHIPQYAFPYPLYRYPHPGYPRPQDIYEMQSYNNAYGGGPQFPFRWFPAYYQPYYGLSRQLIPTAYMKKTQFHDVVGISEPISPSTSISSTGVITETVGPTRVVEVEPSKDQTTSA* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3176 251 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 251 - -
Mtr3g3176 251 PANTHER BOULE-RELATED 1 251 IPR037366 GO:0003729
Mtr3g3176 251 SUPERFAMILY RNA-binding domain, RBD 12 121 IPR035979 GO:0003676
Mtr3g3176 251 Gene3D - 2 116 IPR012677 -
Mtr3g3176 251 CDD RRM_RBM24_RBM38_like 26 101 - -
Mtr3g3176 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 87 IPR000504 GO:0003723
Mtr3g3176 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Mtr3g3176 251 SMART rrm1_1 27 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3176 Mtr-Chr3 45711859 45713736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3176 22 105 C2H2 Transcription Factor Family AT2G19380 41.667 1.55e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3176 - - cam:101508568 360.533