Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3172 ATGATCCATATACGACTTATTTTGTTCCTATGCATCACACTTCATAATTTTCATGGCATCATTTGCAGCAATAACACTGACAAAGATATTCTTCTATCATTCAAATTACAAGTAACTGATCCAAACAATGCTTTGTCCAGTTGGAAACAAGATTCTAATCATTGTACCTGGTATGGTGTCAACTGTTCCAAAGTTGATGAAAGAGTTCAATCTCTAACCTTATCAGGACTTAAACTCTCTGGTAAACTACCCCCTAACCTCTCCAACCTCACTTACCTTCATTCACTTGACCTTTCCAATAACACTTTTCATGGCCAAATTCCATTCCAATTTTCTCATCTCTCACTCCTCAATGTCATTCAATTAGCTATGAACGATCTCAATGGCACACTTCCACCACAATTGGGTCAACTCCATAATCTACAGAGTTTAGACTTTTCTGTCAATAATCTCACAGGTCAAATTCCTTCAACCTTTGGCAATCTCTTATCTCTCAAGAATCTTTCCATGGCAAGGAACATGCTTGAGGGTGAAATTCCAAGTGAATTGGGCAATCTCCACAATCTTTCAAGACTTCAACTCTCAGAGAATAACTTCACCGGCAAGCTTCCTACTTCTATCTTCAACTTATCTTCCTTAGTTTTCTTATCCCTCACACAGAACAATCTATCAGGCGAGTTGCCACAAAATTTCGGCGAAGCTTTTCCGAATATAGGGACACTTGCTTTGGCAACCAATAGATTTGAAGGGGTAATCCCTAGTTCCATATCCAATTCATCACATCTTCAAATTATTGATCTTTCTAACAATAGGTTTCATGGGCCAATGCCTCTTTTCAACAACTTGAAAAACCTCACTCATTTGTATCTCAGTAAGAATAATCTCACTTCCACTACATCATTGAATTTTCAGTTCTTTGATTCCCTTCGAAACTCAACTCAGTTACAAATTCTTATGGTCAATGATAACAACTTGACCGGGGAACTTCCAAGTTCGGTTGATTATCTTTCAAGCAATCTACAACAGTTTTGTGTTGCTAATAATCAGCTAAATGGAAGCATTCCTCATGGAATGAAGAAGTTTCAAAATCTCATATCCTTCTCTTTTGAACAGAATTATTTCACAGGAGAGTTACCATTAGAATTAGGAACACTCAAGAAATTGGTGCAGCTTTTGATACACCAAAATAAATTGTCTGGTGAAATTCCAGACATATTTGGCAATTTTTCAAATCTGATTACTCTTGGAATAGGAAACAACCAGTTCTCAGGTAAAATTCACGCGAGTATAGGACAATGCAAGAGATTGAATTATCTGGACTTGCAAATGAATAAGCTTGTTGGTGTCATACCAATGGAGATTTTTCAACTCTCTAGCTTGACAACTTTATACTTACATGGAAATTCTCTGAATGGTTCGCTTCCTCCTTCGTTCAAGATGGAGCAGCTAGTGGCCATGGTTGTTTCAGACAACATGCTGTCAGGGAACATTCCTAAAATCGAAGTTGACGGATTGAAAACACTAGTGATGGCAAGAAACAATTTTAGTGGCTCAATTCCAAATAGTCTAGGTGATTTAGCATCCCTTGTGACTTTAGATCTATCATCAAACAATCTCACTGGTTCAATTCCCGTGAGTTTAGAAAAGCTTGAGTATATGATGAAATTAAATTTGTCCTTCAACAAATTGGAAGGGGAAGTTCCTATGGAAGGCGTTTTTATGAACCTAAGCCAGGTTGATATCCAAGGTAACAACAAACTATGTGGCCTTAACAATGAAGTTATGCACACGTTAGGAGTCACATCGTGTCTCACAGGTAAGAAAAACAATTTAGTCCCTGTCATACTAGCAATTACAGGCGGTACTGTTTTATTCACGTCAATGCTCTATCTGCTGTGGCTACTTATGTTCTCCAAGAAGAAGCGCAAGGAGGAGAAAACAATTTTGTCATCAACCACTCTATTGGGGTTGACTCAAAATATATCCTATGGTGATATTAAGCTTGCTACAAACAACTTTTCAGCTACAAACTTGGTTGGAAAAGGAGGGTTTGGATCTGTTTACAAAGGTGTGTTCAACATAAGCACTTTTGAAAGTCAAACAACTACACTTGCTGTTAAAGTTCTTGACCTGCAACAAAGCAAAGCCTCTCAGAGTTTTAGTGCAGAATGTGAAGCTTTGAAAAATGTTAGGCATCGGAATCTGGTAAAGGTGATCACTTCTTGCTCCAGCACTGACTACAAGGGGGATGATTTTAAGGCCCTTGTTTTGCAATTCATGCCTAATGGTAATTTGGAGATGAGTTTATACCCGGAAGATTTTGAGTCAGGATCTTCTCTAACCTTGTTGCAAAGGTTAAACATTGCCATTGATGTTGCATCTGCCATGGACTACTTGCACCATGATTGTGATCCACCAATAGTCCATTGTGATCTGAAACCTGCCAATGTCCTACTAGATGAGGATATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTCTTTCTCAAAATCCATCAGAGAAACATAACAGCACTCTAGAACTGAAGGGATCGATCGGCTATATCGCGCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGGATCCTACTATTGGAGATGTTCATAGCCAAAAAACCAACAAATGAAATTTTCAAAGAGGAATTAAGCATGAACAGATTTGCATCAGACATGGATGAAAAGCAATTATTGAAGGTTGTTGATCAAAGACTTGTTAACCGTTACGAATATATGACACAAAATTCCAGCGGTGATAGTCATAGTAGTGAGTCTGGCAACATCAGTTACAGTGATGATAGTAAAGCACATTGGATGTATAAAGCTGAAGAATGCATAACTGCTGCAATGAGAGTTGGCTTATCATGTGTAGCACATCGTCCCAAAGATCGGTGGACCATGAGAGAAGCCTTATCAAAATTGCATGAAATTAAGCGGTATATACTAGGCTTGTGA 3000 0.385 MIHIRLILFLCITLHNFHGIICSNNTDKDILLSFKLQVTDPNNALSSWKQDSNHCTWYGVNCSKVDERVQSLTLSGLKLSGKLPPNLSNLTYLHSLDLSNNTFHGQIPFQFSHLSLLNVIQLAMNDLNGTLPPQLGQLHNLQSLDFSVNNLTGQIPSTFGNLLSLKNLSMARNMLEGEIPSELGNLHNLSRLQLSENNFTGKLPTSIFNLSSLVFLSLTQNNLSGELPQNFGEAFPNIGTLALATNRFEGVIPSSISNSSHLQIIDLSNNRFHGPMPLFNNLKNLTHLYLSKNNLTSTTSLNFQFFDSLRNSTQLQILMVNDNNLTGELPSSVDYLSSNLQQFCVANNQLNGSIPHGMKKFQNLISFSFEQNYFTGELPLELGTLKKLVQLLIHQNKLSGEIPDIFGNFSNLITLGIGNNQFSGKIHASIGQCKRLNYLDLQMNKLVGVIPMEIFQLSSLTTLYLHGNSLNGSLPPSFKMEQLVAMVVSDNMLSGNIPKIEVDGLKTLVMARNNFSGSIPNSLGDLASLVTLDLSSNNLTGSIPVSLEKLEYMMKLNLSFNKLEGEVPMEGVFMNLSQVDIQGNNKLCGLNNEVMHTLGVTSCLTGKKNNLVPVILAITGGTVLFTSMLYLLWLLMFSKKKRKEEKTILSSTTLLGLTQNISYGDIKLATNNFSATNLVGKGGFGSVYKGVFNISTFESQTTTLAVKVLDLQQSKASQSFSAECEALKNVRHRNLVKVITSCSSTDYKGDDFKALVLQFMPNGNLEMSLYPEDFESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPANVLLDEDMVAHVADFGLARFLSQNPSEKHNSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEMFIAKKPTNEIFKEELSMNRFASDMDEKQLLKVVDQRLVNRYEYMTQNSSGDSHSSESGNISYSDDSKAHWMYKAEECITAAMRVGLSCVAHRPKDRWTMREALSKLHEIKRYILGL* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3172 999 SMART serkin_6 673 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3172 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Mtr3g3172 999 ProSiteProfiles Protein kinase domain profile. 673 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3172 999 Pfam Protein tyrosine and serine/threonine kinase 676 902 IPR001245 GO:0004672|GO:0006468
Mtr3g3172 999 ProSitePatterns Protein kinases ATP-binding region signature. 679 707 IPR017441 GO:0005524
Mtr3g3172 999 Gene3D Ribonuclease Inhibitor 279 596 IPR032675 -
Mtr3g3172 999 SUPERFAMILY Protein kinase-like (PK-like) 649 989 IPR011009 -
Mtr3g3172 999 PANTHER RECEPTOR-LIKE PROTEIN 55 89 164 - -
Mtr3g3172 999 PANTHER RECEPTOR-LIKE PROTEIN 55 1 90 - -
Mtr3g3172 999 PANTHER RECEPTOR-LIKE PROTEIN 55 161 990 - -
Mtr3g3172 999 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 90 - -
Mtr3g3172 999 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 89 164 - -
Mtr3g3172 999 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 161 990 - -
Mtr3g3172 999 ProSiteProfiles Leucine-rich repeat profile. 528 551 IPR001611 GO:0005515
Mtr3g3172 999 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Mtr3g3172 999 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515
Mtr3g3172 999 SUPERFAMILY L domain-like 25 309 - -
Mtr3g3172 999 ProSiteProfiles Leucine-rich repeat profile. 284 305 IPR001611 GO:0005515
Mtr3g3172 999 SMART LRR_sd22_2 186 212 - -
Mtr3g3172 999 SMART LRR_sd22_2 526 547 - -
Mtr3g3172 999 SMART LRR_sd22_2 138 164 - -
Mtr3g3172 999 SMART LRR_sd22_2 337 366 - -
Mtr3g3172 999 SMART LRR_sd22_2 282 303 - -
Mtr3g3172 999 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Mtr3g3172 999 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Mtr3g3172 999 Gene3D Phosphorylase Kinase; domain 1 656 759 - -
Mtr3g3172 999 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Mtr3g3172 999 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Mtr3g3172 999 SUPERFAMILY L domain-like 338 591 - -
Mtr3g3172 999 SMART LRR_typ_2 385 408 IPR003591 -
Mtr3g3172 999 SMART LRR_typ_2 282 308 IPR003591 -
Mtr3g3172 999 SMART LRR_typ_2 526 550 IPR003591 -
Mtr3g3172 999 SMART LRR_typ_2 186 210 IPR003591 -
Mtr3g3172 999 SMART LRR_typ_2 457 480 IPR003591 -
Mtr3g3172 999 SMART LRR_typ_2 138 161 IPR003591 -
Mtr3g3172 999 Gene3D Transferase(Phosphotransferase) domain 1 760 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3172 Mtr-Chr3 45681960 45685647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3172 18 994 Receptor kinase-like Gene Family AT3G47570 39.824 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr3g3172 PK_Tyr_Ser-Thr 6.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3172 - - mtr:MTR_3g092390 1771.52