Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3170 ATGGGTGAGTTTCGCGTTCAAGACAAGGAACCTAAAAAAAAAACCAACATTGTTGTTGGGTCGGTGCAGAGTTTTGAAGGTTTCTCTAATAATCATCACCACCGTTCATTTTTTCATAATCATGATTCTTCTTCTGCTTCTGCTGCTGATGCTGATGGTTATGGTCCCACAACATACAACATGTCTTTTGGGGGTGATTCTTCTGCTCTAGGTGCTAATGCTATCATTGATAATGGTGGTGTATCCTTAAATTTTCAACCTTTTCACAACATTTCTGCCTCCAACACAACCCTCAAAGCAGGTGGAATGGCGGCTTCAATAGGAATAGGGTATCCTCCTTTCACAAGTGCTCAATGGAGAGAGCTTGAAAGACAAGCTATGATTTACAAGTACTTGATGGCTTCACTTCCTGTTCCTTCTCATCTTCTTTCATCAGTGGATGGTGGTTTCAATTTGAGGCTATCAAATAGGAACAATACTGATCCAGAGGCTGGTAGGTGCAAAAGAACAGATGGTAAAAAATGGAGATGTTCTAAAGATGTAGCTCTTAATAACAGGTATTGTGAAAGGCATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCACACAAATAACAATAGCAATAGTCATCATCAAATCAAAAAGGCTCGTTGTGATTCTAACCCTTTTTCTGTGCCTGATTTTACTGTGGCTGTTCCTAATCCAACTACAAGAAAATATGGATCTTCATCACATTTTCTTGCTTCTACTCCCCTTCATCCTTATCTCCAATCTTCCCTTTCTTTGCATAATAGCAGCTTTGAGGGTTCAAATAAGCAACCAAGGGGCTTGGAGTGGATGCTGAATGGAGATCCAATTTCCCTTGGTGCTTCTAATTCAGGATGGAACCCTCTGATGCATAACAACAAACTTGGAATGACCAATGAAAGTTCTTATCATAATAACACTGAATCTCAGTATCTGAATTCATTTCCACTATATAACAGTTCTGAACTAGCTCAACATGAAAAACCCTTTCCTCTCTTACTTAATCCCCTTGTTGTTCCAATGCAAACTCTCCAATCTGAGAAACCAAGAGGTTTTAGTTTCATTGATGCTTGGTCTAATACAGAGACAGTGGAAAACAATGCCAACACCACCACCACCTCCAACAATGGTTCTGCATCAGTTGGTAAATTATCCCTTTCATCACTTGATCTATCAATGGGAGGTAGTGCCGTGAGTGAAGAAATGAGTACTATTGAAATGAATGCTGCGGGTGACGATGATAGTACTAAAATAGCATTATCAAATTGGCTCAATTCAGCACAACCTTGGTTAGGTTCAACACCTGGTGGTCCACTAGCTGAAGTTCTAAGGCCAAGCAATGTTACTTCCATCAGTGATGCAACAAATTCTAATCCATCTTCACCTCTCACAACAACAAATCGTGTCGAATCCATTGGCACTTCAGGAACAGGAATGGTATCCTCTCCATCTGGTGTTTTGCATAATAAAACACTTGCTTCATTTTCTGATAGTAGTGGTAATAGCAGTCCAAATGTTGCATCATCAAGAGCTAATTCTGAAATTGCCTTACTCAATAAGTTTAATCATATTTCATATGTAAATTAA 1626 0.3954 MGEFRVQDKEPKKKTNIVVGSVQSFEGFSNNHHHRSFFHNHDSSSASAADADGYGPTTYNMSFGGDSSALGANAIIDNGGVSLNFQPFHNISASNTTLKAGGMAASIGIGYPPFTSAQWRELERQAMIYKYLMASLPVPSHLLSSVDGGFNLRLSNRNNTDPEAGRCKRTDGKKWRCSKDVALNNRYCERHMHRGRPRSRKPVELHTNNNSNSHHQIKKARCDSNPFSVPDFTVAVPNPTTRKYGSSSHFLASTPLHPYLQSSLSLHNSSFEGSNKQPRGLEWMLNGDPISLGASNSGWNPLMHNNKLGMTNESSYHNNTESQYLNSFPLYNSSELAQHEKPFPLLLNPLVVPMQTLQSEKPRGFSFIDAWSNTETVENNANTTTTSNNGSASVGKLSLSSLDLSMGGSAVSEEMSTIEMNAAGDDDSTKIALSNWLNSAQPWLGSTPGGPLAEVLRPSNVTSISDATNSNPSSPLTTTNRVESIGTSGTGMVSSPSGVLHNKTLASFSDSSGNSSPNVASSRANSEIALLNKFNHISYVN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3170 541 ProSiteProfiles WRC domain profile. 161 205 IPR014977 -
Mtr3g3170 541 MobiDBLite consensus disorder prediction 193 216 - -
Mtr3g3170 541 SMART QLQ_2 112 148 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr3g3170 541 PANTHER - 86 525 IPR031137 GO:0005634|GO:0006351|GO:0032502
Mtr3g3170 541 ProSiteProfiles QLQ domain profile. 113 148 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr3g3170 541 PANTHER GROWTH-REGULATING FACTOR 7 86 525 - -
Mtr3g3170 541 Pfam QLQ 113 145 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr3g3170 541 Pfam WRC 162 204 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3170 Mtr-Chr3 45643052 45646029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3170 365 512 GRF Transcription Factor Family AT5G53660 35.000 2.24e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Mtr3g3170 WRC 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3170 - - mtr:MTR_3g092330 987.638