Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3162 ATGATGGAGGAAGAAGAGAATATTCATGAAGGGTTTAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGTCAGAATCAAAGTTGGAACCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAAAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCTCATGATGGAGGAAGGGAAGCAAAGGAAAATAGCACAGAAGATGGTGGTTCAAGAAATGGATACAACAATAGCAGGTTTGAAGAAACAAAGCAAAGGTTTTCAAATGAGGGTTTGGAGGATAAAGTGGTAATTTATTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAGTTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGACCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA 738 0.3591 MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSRNGYNNSRFEETKQRFSNEGLEDKVVIYSDDQNERSTTWTEKVEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3162 245 MobiDBLite consensus disorder prediction 1 40 - -
Mtr3g3162 245 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677
Mtr3g3162 245 SMART HOX_1 36 97 IPR001356 GO:0003677
Mtr3g3162 245 CDD homeodomain 40 94 IPR001356 GO:0003677
Mtr3g3162 245 SUPERFAMILY Homeodomain-like 22 93 IPR009057 -
Mtr3g3162 245 Pfam Homeobox associated leucine zipper 93 133 IPR003106 GO:0006355|GO:0043565
Mtr3g3162 245 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Mtr3g3162 245 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 245 - -
Mtr3g3162 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 245 IPR045224 GO:0003700
Mtr3g3162 245 MobiDBLite consensus disorder prediction 136 150 - -
Mtr3g3162 245 Coils Coil 85 133 - -
Mtr3g3162 245 Pfam Homeodomain 39 91 IPR001356 GO:0003677
Mtr3g3162 245 MobiDBLite consensus disorder prediction 151 165 - -
Mtr3g3162 245 MobiDBLite consensus disorder prediction 134 167 - -
Mtr3g3162 245 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677
Mtr3g3162 245 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677
Mtr3g3162 245 Gene3D - 19 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3162 Mtr-Chr3 45546434 45547928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3162 25 245 Homeobox Transcription Factor Family AT2G46680 42.678 2.40e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr3g3162 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3162 K09338 - gmx:100499926 342.428