Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3154 ATGGGAGGTTTTTCAGATACGAAGGTTTTACAAGACCTGTTGTTGTACGCGGCAAGGGCGGCGCTGAGTTACTGGGTTTTGGTCACAGGTCTCCGCTATCTCGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAACAGAAGAAAGAGATTGCTAAACGTCTTGGTCGCCCTCTTATTCAAACCAATTCCTATGAGGATGTAATAGCGTGTGATGTTATAAATCCTGACCACATCGATGTAGAATTTGACTCTATTGGGGGTCTTGAAACAATCAAACAAACTTTGTTTGAGCTTGTTATTCTACCCCTGCAACGACCAGACTTGTTTTCGCATGGCAAACTCCTTGGACCACAAAAGGGGGTACTGTTGTATGGACCTCCTGGCACTGGGAAAACCATGCTCGCAAAAGCTATTGCCAAGGAGTCCGGAGCAGTTTTTATTAATGTGAGGATATCCAACCTGATGAGCAAATGGTTCGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCTCATAAACTTCAGCCATCCATTATATTCATCGATGAAGTAGACAGTTTTTTAGGTCAGCGTCGTTCATCGGATCATGAGGCTGTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCGCCACCGATCAGAGTGCTCGGGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGACTTCCTCAAGCCTTTGAAATTGGATATCCAGACCGGAAAGAGAGGGCTGATATATTGAAGGTTATCTTAAAGGGGGAGAAGGTTGAAGATAACATAGATTTCAGTTATATAGCTGGTTTATGCAAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCCGCATATTTTCCTATTAGAGAAATACTGCATAATGAGAAGAATGGGGAACAATCCTGTGAACCTAGACCTTTATCGCAGGCAGATTTGGAGAAGGCCCTTTCTACTTCACGGAAGACATCGGTTGCTGCAAATGAATACAGTAGAATGACATCAAGAACGTCGTTTCCTGGCGAGTCAGGTGATTCCCAGGTTGAAGCTGCAATCAGGGAATTATCTAAGATTATGGGGGTTTCTCACATCCAAGTAGATGCTCAGGATTAA 1158 0.4421 MGGFSDTKVLQDLLLYAARAALSYWVLVTGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHIDVEFDSIGGLETIKQTLFELVILPLQRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLGQRRSSDHEAVLNMKTEFMALWDGFATDQSARVMVLAATNRPSELDEAILRRLPQAFEIGYPDRKERADILKVILKGEKVEDNIDFSYIAGLCKGYTGSDLFDLCKKAAYFPIREILHNEKNGEQSCEPRPLSQADLEKALSTSRKTSVAANEYSRMTSRTSFPGESGDSQVEAAIRELSKIMGVSHIQVDAQD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3154 385 MobiDBLite consensus disorder prediction 339 361 - -
Mtr3g3154 385 Pfam AAA+ lid domain 274 309 IPR041569 -
Mtr3g3154 385 SMART AAA_5 118 254 IPR003593 -
Mtr3g3154 385 CDD AAA 116 252 - -
Mtr3g3154 385 Gene3D - 253 333 - -
Mtr3g3154 385 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Mtr3g3154 385 Gene3D - 80 344 IPR027417 -
Mtr3g3154 385 MobiDBLite consensus disorder prediction 339 359 - -
Mtr3g3154 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 334 IPR027417 -
Mtr3g3154 385 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Mtr3g3154 385 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 5 372 - -
Mtr3g3154 385 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3154 Mtr-Chr3 45483487 45488533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3154 81 312 Calmodulin-binding Proteins AT3G56690 35.714 4.38e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3154 K22530 - gmx:100796908 615.535