Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3138 ATGGGTAGTTTCAGTGGAGAAGAAGATTGTCGGTTTTTTGATGCTGAAGAGGATGTTCTGTCTATTAGGGATGTAAATTCCGATGATGATGATAAAGGGGTGTCTGTGTCTGTTGATTTTGATTATGAAGTGTGGATTCGGAGTCCAAAGAGTGTGAGAGAGCGTAGGAGGAGGTTTATGAAGAGCATGGGAATGAGTGTAGATGAAATTGTAGTTGAAAATTCGTTAGATTTTGAGAAGGAAGATATTATGGAAATAGGAAAAGACAGTAATGGTTCTGTAGAGGAATTCAGTTCATGTCGGTTGTCATTGTCTTGTTGCTCTAGTGTGAGTTCTTCGGAGGAATTTGGTTTAGTGGATATTAATAACTTGCCATTTCAAGATGGAAATTTAGAGAAAAGAATGAGGGCTAATGAGAAGATGAGTGATTGTTCAGATCAATTGGTAGTTGCTAAGGAATCTGAGGATTTTGTGAATGTCTCTGGAGTGTCTCATTTTCAAGGATTGGTAGATAGGGAGTTTGAGGATACAAATGGTGTTGTGGTTACTAGAACGATAAATAGGGCAAGAAGGGGTTGGTTGAGAAGATTGAGATCGATGACGTGCGTGGTTGATAATGATAGAAAAGAAGGGAGTTATGCAGTCTCAGGGTGTAGGCTTCAGAAAGTAAAGGTCCGTCAATGTAGGAAGAAAATGAAGGAACTTTCATCACTTTACTTGAGGCAAGATATTCAAGCGCACGAAGGTGCAATTTTGACCATGAAATTTAGTCCTGATGGGCAGTATCTGGCCACAGGTGGTGAAGACGGGGTTGTTCGGGTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAATTCACATTCCAGAAATTGACCCCTCAAGCATTTACTTTACAGTGAATAATCTCTCTCAATTGACACCATTGTTTATGGATAAGGAAAAACTTGGTCAACTGAAGAGCATGAGAAAGACTGCAGATTCAGCTTGTGTTGTTTTCCCGCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCATGAGTTCCGTGGGCATAGAAGTGAAGTTTTGGATCTCTCTTGGTCAAAGAAGAATTATCTTCTTTCATCATCAACTGACAAAACTGTCCGACTATGGCAAGTGAATCGTGACCATTGCTTGGAAGTGTTTTCACACAGTAATTATGTGACATGCATACAATTCAATCCTGTTGATGAAGATTATTTCATTAGCGGATCCATAGACGGAAAGGTGCGCATCTGGACGATTCCCGATTCTCAGGTTGTTGATTGGACTGATGTCAGAGACATAGTGACTGCAGTATGTTATCGACCGGATGGGCAGGGAGGAATTGTTGGATCTTTAGAAGGAAATTGTTGGTTTTATAAAATATCAGATAACCAATTGCAGTTGGATTCCCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCTCAAGATTCCAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTCAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTTAACACAGGGAGTCCAATGTGTGCATCATTTACCTCAGACGGGAAACATATTTTATCAGCATGCGAGGACTCTAATGTATATCTATGGAACGTTAATCAGGAAGAGTCTAATAACCCCATGAAATCTAAGAAAGTTAGGTCTTGTGAGCGGTTTTCCTCAAACGCATCAGTTGCGGTACCTTGGCACGGTTTGAAACCTCAAGTCACCGAAAATGAACAATTGAATGTCTTGGATAAAAAGTCACCACAAGTTGTTATGCAATTACACCCCAACCCACCTGCTTCTTTCTCTCTGAGCCAAGATTTTTTCTTAGAGTCTTTTCCAAAGGGATCTGCAACATGGCCCGAGGAGAAGCTTCCTGTTTCGGGCTCCAAGACCAAAAAAACATCATTGCTGCGAAAGTCCGAATACAAATTCTTGAAATCTTCGTGCAAGAGTACCAACAGCGCTCATGCGTGGGGTATGGTCATTGTGACTGCAGGCTGGGATGGGAAGATAAAAACATTCCAAAATTACGGGCTACCTGTACCAGTTTGA 2109 0.4092 MGSFSGEEDCRFFDAEEDVLSIRDVNSDDDDKGVSVSVDFDYEVWIRSPKSVRERRRRFMKSMGMSVDEIVVENSLDFEKEDIMEIGKDSNGSVEEFSSCRLSLSCCSSVSSSEEFGLVDINNLPFQDGNLEKRMRANEKMSDCSDQLVVAKESEDFVNVSGVSHFQGLVDREFEDTNGVVVTRTINRARRGWLRRLRSMTCVVDNDRKEGSYAVSGCRLQKVKVRQCRKKMKELSSLYLRQDIQAHEGAILTMKFSPDGQYLATGGEDGVVRVWQVVEEDRCNEIHIPEIDPSSIYFTVNNLSQLTPLFMDKEKLGQLKSMRKTADSACVVFPPKIFRLLEKPLHEFRGHRSEVLDLSWSKKNYLLSSSTDKTVRLWQVNRDHCLEVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWTIPDSQVVDWTDVRDIVTAVCYRPDGQGGIVGSLEGNCWFYKISDNQLQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVTCADSQVRILDGLNVICKYKSLNTGSPMCASFTSDGKHILSACEDSNVYLWNVNQEESNNPMKSKKVRSCERFSSNASVAVPWHGLKPQVTENEQLNVLDKKSPQVVMQLHPNPPASFSLSQDFFLESFPKGSATWPEEKLPVSGSKTKKTSLLRKSEYKFLKSSCKSTNSAHAWGMVIVTAGWDGKIKTFQNYGLPVPV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 277 - -
Mtr3g3138 702 Gene3D - 479 695 IPR015943 GO:0005515
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 381 - -
Mtr3g3138 702 SUPERFAMILY WD40 repeat-like 237 693 IPR036322 GO:0005515
Mtr3g3138 702 ProSitePatterns Trp-Asp (WD) repeats signature. 541 555 IPR019775 -
Mtr3g3138 702 Gene3D - 182 335 IPR015943 GO:0005515
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 563 IPR001680 GO:0005515
Mtr3g3138 702 Gene3D - 339 478 IPR015943 GO:0005515
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 388 IPR001680 GO:0005515
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 277 IPR001680 GO:0005515
Mtr3g3138 702 Pfam WD domain, G-beta repeat 385 420 IPR001680 GO:0005515
Mtr3g3138 702 Pfam WD domain, G-beta repeat 245 275 IPR001680 GO:0005515
Mtr3g3138 702 Pfam WD domain, G-beta repeat 343 378 IPR001680 GO:0005515
Mtr3g3138 702 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Mtr3g3138 702 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Mtr3g3138 702 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Mtr3g3138 702 SMART WD40_4 514 554 IPR001680 GO:0005515
Mtr3g3138 702 SMART WD40_4 473 513 IPR001680 GO:0005515
Mtr3g3138 702 SMART WD40_4 382 421 IPR001680 GO:0005515
Mtr3g3138 702 SMART WD40_4 341 379 IPR001680 GO:0005515
Mtr3g3138 702 SMART WD40_4 237 276 IPR001680 GO:0005515
Mtr3g3138 702 SMART WD40_4 423 462 IPR001680 GO:0005515
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 422 - -
Mtr3g3138 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 430 IPR001680 GO:0005515
Mtr3g3138 702 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 702 - -
Mtr3g3138 702 PANTHER WD REPEAT DOMAIN 44 7 702 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3138 Mtr-Chr3 45319095 45323858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3138 244 412 U-box Gene Family AT2G33340 22.335 1.64e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3138 - - cam:101493225 1091.26