Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3126 ATGGACTTCTTCACCCAACCTGAAATCACTCAAAGCTTCAACTGGTTTTGCAATGTTCAACCTCAACAAAACGACACAGACAAAATCATGGGTATTGCGCCATTTGATGATTTCTTTGAGTTTGATTGGGCAACTCAATTTTCATACCAAAGTAATCATTTTTACATGAATGACTTCGATGATCTTGAAAATTTCAACTTTGATTTCAACCTCCCACACCTTGATCAGAATAATTTTGAGGTTGATAAAAAACCCCTCAATGTTGTCTTGCCTGAGTTGGGGCATTACAATCACAAAGGTGAGACTGTTGGTTACGTTGAAGCTTCTGTGAAAACTGAAAGTGGGTTTGTGAGTTTTGTGAAGAAAGAGAATGAATGGGAGAATCAGGAATTGTCGTCATTAGTTCCATTGGCATTGCAAAGTAGCAGTACTAGCATCATTAGGAAGAGGTCATCTTCATTGCAATTTGATGATATAAAGAAACATTTTGATGTTCCTATAACAATGGCTGCTAAGAAACTGAATGTTGGTGTGACCTTTTTGAAGAAAAGATGCAGGGAGCTCAACATCACTAGGTGGCCTCACAGAAAATTGAGGAGTTTGATGTTACTCATCGACAACCTTAAGGACAAGGGTTTGACTAAGGAAGTTGCAATGTTGGAGAAGCAAAAAAAGATGTTGGAGAAACTTCCGGGAATGCATTTGAATGATGAAATCAAGAAGCTGAGGCAAGCATGCTTTAAAGCTAATTACAAGAACAGAAAACTAATTGCCCTCTGTCCTTGA 786 0.3817 MDFFTQPEITQSFNWFCNVQPQQNDTDKIMGIAPFDDFFEFDWATQFSYQSNHFYMNDFDDLENFNFDFNLPHLDQNNFEVDKKPLNVVLPELGHYNHKGETVGYVEASVKTESGFVSFVKKENEWENQELSSLVPLALQSSSTSIIRKRSSSLQFDDIKKHFDVPITMAAKKLNVGVTFLKKRCRELNITRWPHRKLRSLMLLIDNLKDKGLTKEVAMLEKQKKMLEKLPGMHLNDEIKKLRQACFKANYKNRKLIALCP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3126 261 PANTHER PROTEIN RKD4 141 255 IPR044607 GO:0003700
Mtr3g3126 261 Pfam RWP-RK domain 154 201 IPR003035 -
Mtr3g3126 261 ProSiteProfiles RWP-RK domain profile. 141 223 IPR003035 -
Mtr3g3126 261 PANTHER PROTEIN RKD4 141 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3126 Mtr-Chr3 45204601 45206865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3126 154 258 AtRKD Transcription Factor Family AT5G53040 59.048 1.21e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr3g3126 RWP-RK 4.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3126 - - aprc:113850801 246.514