Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3122 ATGATATCTCCAGCTCAATCACCAATGCATCACCATCAAGCTCAACCCCCATATTCTCCACTAATATCAAAGCCATCATCTTCTGGAGTAGACTTCAGTCCACCCCTGATAGCAATGGTAGTCGTTGTCGCCGCCGCATTTGTCCTCGTAACCTACTCCCGCCTCATCACCCGCCATCTTTCCCCTCCCATCCACCGTCTCATTCAACGCTTCCACCGTCCTCCTCCCTCCTCCTCCTCCTTAGGCGATATTGAATCCCTTCAATACGACTCAACATCTTTCGAAACACCACTCACCTACGGTTTAGACGAATCTATCATCAAAACAATCCCATTCTTTATCTACACAACTAAATACGAACAAGAATCTCGCCGTGACTGTGCCGTTTGTTTACTCGAATTTGAAGATCACGATTACGTTCGTACTCTTCCTCTCTGTTCCCACACTTTTCATCTTGACTGCATTGATGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGCTCTCTTCTTCTCTGTGAGTCTCCATTCAGACCTCTTATGGCTGCTAGAATTCGTCCTTCCTTTCATGACCAAACTAATGCACTTCATCTTGATACGCCGGCGCCGGAGATTACTCCTCATTCTCCAGTTAACGGTGAAGAGAATCGGTTTACCAGACGAGAGGATTTTCTGTTGAAACGATCTTATTCTTTTGGTTTTGAACGGAGTTTACCGTCGGAGAGGATGGTTATTGATCCTGCCACAACCTCACCGTGGCGGTATCGAAGAGGGAGTAACAGTTTCTGGAGTAAAAGACCGTCGCCGTTTGGTTCATTAGGGAAGTCTAGAGTGTTCTCGTTCAGATATTATAGAGGAATGAAATCACCGTTTTTCCGGCGGAGGGGATTCTTTCCGTTGTCGGAGTCAAGTGTTAGATACGCCGGAGATGGAGGAAGTTCATGGCGGAGGAGTAAATCAATAGCGAGTCCAATGTTTTCAAGATCATCGGCGGCGGTTTTTTCATCAAGCCGGCTGAGGTGCGGTGATCCAGAGGCGTTACTCTCGCCGGAGAGATTTAACCGGCGACGATGA 1077 0.4763 MISPAQSPMHHHQAQPPYSPLISKPSSSGVDFSPPLIAMVVVVAAAFVLVTYSRLITRHLSPPIHRLIQRFHRPPPSSSSLGDIESLQYDSTSFETPLTYGLDESIIKTIPFFIYTTKYEQESRRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLCESPFRPLMAARIRPSFHDQTNALHLDTPAPEITPHSPVNGEENRFTRREDFLLKRSYSFGFERSLPSERMVIDPATTSPWRYRRGSNSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYAGDGGSSWRRSKSIASPMFSRSSAAVFSSSRLRCGDPEALLSPERFNRRR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3122 358 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 333 - -
Mtr3g3122 358 SUPERFAMILY RING/U-box 111 178 - -
Mtr3g3122 358 SMART ring_2 127 168 IPR001841 -
Mtr3g3122 358 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3122 358 CDD RING-H2_PA-TM-RING 126 169 - -
Mtr3g3122 358 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Mtr3g3122 358 Pfam Ring finger domain 126 169 IPR001841 -
Mtr3g3122 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 333 IPR044675 -
Mtr3g3122 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3122 Mtr-Chr3 45163910 45166954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3122 21 357 C3H Transcription Factor Family AT3G18930 49.744 4.31e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3122 - K19041 gmx:100806115 463.766