Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3116 ATGGAGTTGGATAGCATTGAGTGTGTGTCATCTTCTGATGGTATGGATGAAGATGAGATCCATTCACATCATCATCATCACTCTGAATTTTCTTCCACAAAGGCTAGAAATGGAGGTGCAAATATCAATAATATTTTGGGTCCTACCGCCATTGCTCCTGCAACTAGTGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCAATGTACCCTCCTATTCACCAGTGTCACAATGGCCACACACTATGTTCCACATGCAAAACACGAGTGCATAACCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATCAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCGTGCAAGTACTACTCCCTCGGATGTCCAGAAATATTTCCATACTACAGCAAGCTTAAGCATGAGACAGAATGTAATTTTAGACCTTATAGTTGTCCTTATGCTGGATCAGAGTGTTCCACAGTTGGAGATATTTCCTTCCTCGTTGCTCATTTGAGGGATGATCATAAGGTGGACATGCACACCGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGGTTTATGGGCGACGAAAATGATGCCCGGAACTACAGCTATAGCCTGGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAAGGTACACCACGAAGTGTTCGAGATAGCCACCGTAAAGTTCGGGATAGCCATGATGGTCTCATCATTCAAAGAAATATGGCACTATTTTTCTCTGGTGGGGATAGGAAGGAGTTGAAACTTAGAGTCACCGGAAGAATATGGAAGGAACAGAATCAAGATGCTGCAGTGTGCATACCTAATCTATGTAGCTGA 975 0.4359 MELDSIECVSSSDGMDEDEIHSHHHHHSEFSSTKARNGGANINNILGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETECNFRPYSCPYAGSECSTVGDISFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQDAAVCIPNLCS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3116 324 CDD Sina 177 305 - -
Mtr3g3116 324 SUPERFAMILY RING/U-box 52 105 - -
Mtr3g3116 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 115 IPR013083 -
Mtr3g3116 324 CDD RING-HC_SIAHs 61 99 - -
Mtr3g3116 324 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Mtr3g3116 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 304 IPR008974 GO:0005515
Mtr3g3116 324 MobiDBLite consensus disorder prediction 1 36 - -
Mtr3g3116 324 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr3g3116 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 316 - -
Mtr3g3116 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 316 - -
Mtr3g3116 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 167 IPR013083 -
Mtr3g3116 324 SUPERFAMILY TRAF domain-like 116 308 - -
Mtr3g3116 324 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3116 Mtr-Chr3 45092721 45095715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3116 54 311 C3H Transcription Factor Family AT2G41980 80.233 9.83e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3116 K04506 - gmx:100810573 631.328