Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3109 ATGGAGTACGGAAGGTTAGGACTATCCGACCCTGGTGGCTCGACACCCTCCCAACCTATAATAAACACTACCAAACCTAGATCTTCAAAGAAGAAGATCATTTTCCTCTCACTCCTCGCCGTGTTACTAATCATCGCCTCCACTATCTCTGCCGCAATGCTCACCGGAATCCACTCTCACACTACATCCGAACCAAAAAACCCTACTCTCCGACGTAATCCAACGCAAGCTATCTCTAACACATGCAGCAAAACTCGTTTTCCATCACTCTGCATCAACTACCTCCTCGATTTCCCTGACTCTACTGGTGCATCGGAGAAAGATCTTGTTCACATTTCACTCAACATGACGCTACAGCATCTCTCCAAAGCACTATACACCTCCGCCTCTATCTCCTCCACCGTTGGAATCAACCCCTACATCCGTGCCGCTTACACAGACTGTCTTGAACTACTAGACAATTCCGTCGACGCTCTTGCTAGAGCACTCACCTCCGCCGTACCTTCCTCCTCCTCCAACGGTGCTGTTAAGCCTCTTACATCATCTTCCACTGAAGATGTCCTCACGTGGCTGAGTGCTGCGCTCACTAACCAAGACACGTGCGCTGAGGGTTTTGCCGACACTTCCGGCGATGTTAAGGATCAGATGACTAATAACTTGAAAGACTTGTCGGAGCTTGTGAGTAATTGTTTAGCCATTTTCTCTGCCGGTGGTGGTGATGATTTCTCCGGCGTTCCGATAGGGAACAGGAGAAGGTTAATGACAATGCCAGAACCGGAAGATGATTTTCCGGTATGGTTGAAGAGAAGGGAAAGGAGATTGTTGAGTTTGCCGGTGACGACGATACAAGCTGATGTGATTGTTTCCAAAGACGGTAACGGAACGGTGAAAACTATATCGGAAGCTCTTAAGAAGATACCTGAATATGGTAACCGACGATTCATTATCTATATCAAACAAGGAAGGTACGAAGAGGACAATTTAAAGGTGGGAAGGAAGAAAACTAATGTTATGATCATAGGAGACGGAAAGGGAAAGACAGTGATCACAGGGGGGAAAAATGTTATGCAAAACTTGACAACATTTCACACTGCTTCCTTTGCTGCTAGTGGTCCAGGTTTTATTGCAAAAGACATGACATTTGAGAACTACGCCGGACCAGCAAAGCACCAAGCGGTGGCCCTCCGTGTCTCATCGGACCATGCGGTGGTTTACCGTTGCAACGTCATCGGATACCAAGACACAATGTACGCACATTCAAATCGTCAATTTTACCGTGAATGTGACATTTACGGTACGGTAGACTTCATATTTGGCAATGCTGCAGTTGTTTTTCAAAACTGTAGCCTCTATGCAAGAAAGCCTATGCCCTACCAAAAAAACACCATCACAGCCCAAAACAGAAAAGACCCAAATCAGAACACTGGTATATCCATCCACAACTGTAGGATCCTAGCCACACAAGATCTTGAAGCCTCCAAGGGAAATTTCACAACATATCTTGGCCGTCCATGGAAACTATACTCTAGAACAGTGTACATGTTATCTTACATGGGAGATCATGTACATCCACGTGGATGGTTAGAGTGGAATACAACATTTGCTTTAGACACTTTGTATTATGGTGAATACATGAATTATGGACCTGGTGGAGCTATTGGGCAACGTGTAAAGTGGCCTGGGTATCGGGTTATTACATCCACCGTGGAAGCAAATAGATTCACGGTGGCCCAATTCATATCGGGGTCCACTTGGTTGCCCTCTACTGGGGTGGCATATGTAGCTGGCTTATCCACTTGA 1800 0.4606 MEYGRLGLSDPGGSTPSQPIINTTKPRSSKKKIIFLSLLAVLLIIASTISAAMLTGIHSHTTSEPKNPTLRRNPTQAISNTCSKTRFPSLCINYLLDFPDSTGASEKDLVHISLNMTLQHLSKALYTSASISSTVGINPYIRAAYTDCLELLDNSVDALARALTSAVPSSSSNGAVKPLTSSSTEDVLTWLSAALTNQDTCAEGFADTSGDVKDQMTNNLKDLSELVSNCLAIFSAGGGDDFSGVPIGNRRRLMTMPEPEDDFPVWLKRRERRLLSLPVTTIQADVIVSKDGNGTVKTISEALKKIPEYGNRRFIIYIKQGRYEEDNLKVGRKKTNVMIIGDGKGKTVITGGKNVMQNLTTFHTASFAASGPGFIAKDMTFENYAGPAKHQAVALRVSSDHAVVYRCNVIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPYQKNTITAQNRKDPNQNTGISIHNCRILATQDLEASKGNFTTYLGRPWKLYSRTVYMLSYMGDHVHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGQRVKWPGYRVITSTVEANRFTVAQFISGSTWLPSTGVAYVAGLST* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3109 599 CDD PMEI-like_3 82 236 - -
Mtr3g3109 599 Pfam Pectinesterase 285 582 IPR000070 GO:0030599|GO:0042545
Mtr3g3109 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 235 IPR035513 -
Mtr3g3109 599 SMART PMEI_2 73 233 IPR006501 GO:0004857
Mtr3g3109 599 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 234 IPR006501 GO:0004857
Mtr3g3109 599 PANTHER PECTINESTERASE 26 597 - -
Mtr3g3109 599 Pfam Plant invertase/pectin methylesterase inhibitor 77 233 IPR006501 GO:0004857
Mtr3g3109 599 Gene3D - 279 597 IPR012334 -
Mtr3g3109 599 SUPERFAMILY Pectin lyase-like 280 596 IPR011050 -
Mtr3g3109 599 MobiDBLite consensus disorder prediction 1 24 - -
Mtr3g3109 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 236 IPR035513 -
Mtr3g3109 599 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Mtr3g3109 599 PANTHER PECTINESTERASE 26 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3109 Mtr-Chr3 45030260 45034483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3109 14 598 Carbohydrate Esterase AT3G49220 66.384 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3109 - - gmx:100808236 871.692