Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3106 ATGTATAGAGAAAATGGTCTTCTTTTCCCATGGTCTTATCTACATAATTTCTCTCAAGAGCTTCATCAACTTGAAGACTACTGCAGAAACCAGAAGTTCAATGCTTCAATGAGTGACCTTGTTCAGTTTTCTGCAATGTCCGAATATGATTTTGCAGCAGAGGGAGATCTGTTCAAAGCACCCGAACCGATGATCGAAGAGTCGGGCATTGACCTTGATCCCATGACAGCAGCCATCTCAATGATATCTTGTGGCGAAGACGTAAAGTCCACAGATATTTCTATTCTTCAAAATGAACAGCTTCTCAGCGATGTATTCTATGATTGCAAAAAGGATCTATTTGAGAAGGCGGGAATGGAGTCACCACTCTCTGAGATTCTAGAAATCAAGGTTCCATTACTGAACATTGACGAGAACATAATTCAAGAAAACAAGCCACTTCCTGATATGCCATTATTACTGAAGAGCGTTAGCTCAGGAAGTTTAAGTTCGATGGATTGGATGCATGGATCTGCTGCAATGAAGCCTGCTTTCCTTGGTATCTCAGGAATAGATTTTGATGCGGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTTTTGGCAATGCTAATATGAACGTTGTCCAATCTCCCGTGGAGAGGCCGTTTTTTACCAGTAACTGCAGCAGTGAGGAGCGCTTGCAAAAGCTCTCTAGATACAGGAACAAGAAGACAAAGAGGAATTTCGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTAGCTGACAGTCAACCAAGAGTCCGTGGAAGATTTGCAAAGAATGAAGAAACTGATCAGGCAAAGAAGGAATGA 846 0.4173 MYRENGLLFPWSYLHNFSQELHQLEDYCRNQKFNASMSDLVQFSAMSEYDFAAEGDLFKAPEPMIEESGIDLDPMTAAISMISCGEDVKSTDISILQNEQLLSDVFYDCKKDLFEKAGMESPLSEILEIKVPLLNIDENIIQENKPLPDMPLLLKSVSSGSLSSMDWMHGSAAMKPAFLGISGIDFDAVYGMRRSFSEGDIKTFGNANMNVVQSPVERPFFTSNCSSEERLQKLSRYRNKKTKRNFGRKIKYACRKALADSQPRVRGRFAKNEETDQAKKE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3106 281 Pfam CCT motif 230 272 IPR010402 GO:0005515
Mtr3g3106 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 28 280 - -
Mtr3g3106 281 MobiDBLite consensus disorder prediction 260 281 - -
Mtr3g3106 281 PANTHER CCT MOTIF FAMILY PROTEIN 28 280 - -
Mtr3g3106 281 MobiDBLite consensus disorder prediction 266 281 - -
Mtr3g3106 281 ProSiteProfiles CCT domain profile. 230 272 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3106 Mtr-Chr3 45007082 45010152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3106 205 277 C2C2-CO-like Transcription Factor Family AT5G57660 41.333 2.44e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g3106 CCT 3.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3106 - - gmx:100814332 414.846