Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3101 ATGTCTTCAACGTTGCTAGAAGCAACTCGAGCAGCACATGAGGAAGTGGAGCGATTGGAGAGGGTAATAGTGAAGGATCTCCAGAATGAACCAACTTCCAACAAGGACCGTTTGTATCAGAGTCACCGTGTTCGGAATATGATTGTTACTATCACTTCCACCACTGAACGACTTATTGATATATATGATGATAAAGATAATGCTAGGAAGGATGAGATTGCTGCACTTGGTGGACAAACTGCTACTGGAATCAATCTTTTTAGTGCCTTTTATGATAGACTCAAAGAGATACGAGAGTATCATAGGAAGCACCCAGCTGCACGTGTTGTTGACGCAAATGACGATTTTGAAGATCTTCTTAAAGAGGAACCTAAAATTGAGTTTAGCGGAGAGGAAGCTTTTGGTCGATACTTAGACATTAATGAGTTATACCAGCAGTATGTCAATTCTAAGTTTGGAGAGCCAATTGAATATTCTGCATACCTTGATATTTTTTCTGAGACAGATAAGATTCCTCGCAAAATGAAAACAACCAGGCAGTACAGGGAGTACTTGAAGAATCTTTTGCAGTATCTAACATCTTTTTTCCATCGGACAGAACCCCTGCAAGATCTTGATAGAATCTTTTCAAAGGTAACAACTGAGTTCAATGAAAATTGGGCTACTGGAAGGGTATTGGGATGGGAGAATGTCAATCAGGAGAATGGACATGTACCTGCTCAGCACACTGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTTATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTTGCTGCATTGGGACTTAAGACTGGTGGCACTATTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGCACACGCCTCTTGAAATGCTGGACAAGAAGCATTTTGCCAAGGGGGCGCGTGGTTCAGAAAAAAATGGGGTAGCTGCTGCTCCACAAGATGGAAATTTAAAAGAAATTGCATTAATGGAGGCCAAAATGAATAAACTGTGTGATTTGTTAGATGAGACAATTACTCGAACAAAAGACAATATTGTAAAGAAGCAAGCCCTAACATACGAGGAAATCGAAGCAGAACGTGAGGAGGAAGAGACTCAAGAGGACTCTGAAAGCGAAGATGACGAGCAGCAGATTTATAATCCCTTAAAGTTACCAATGGGATGGGATGGGAAGCCTATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGCGAGATATGCGGGAACTACAGTTATTGGGGGCGTCGTGCTTTTGAACGACACTTTAAAGAATGGCGTCATCAACATGGGATGCGATGCCTTGGTATACCAAATACAAAGAACTTCAATGAAATTACGTCAATTGAGGAAGCAAAAGAGCTCTGGAAGAAGATACAGCAGAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATATACTGATTTACAACGCCAGGGGCTGATATGA 1527 0.4172 MSSTLLEATRAAHEEVERLERVIVKDLQNEPTSNKDRLYQSHRVRNMIVTITSTTERLIDIYDDKDNARKDEIAALGGQTATGINLFSAFYDRLKEIREYHRKHPAARVVDANDDFEDLLKEEPKIEFSGEEAFGRYLDINELYQQYVNSKFGEPIEYSAYLDIFSETDKIPRKMKTTRQYREYLKNLLQYLTSFFHRTEPLQDLDRIFSKVTTEFNENWATGRVLGWENVNQENGHVPAQHTAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEMLDKKHFAKGARGSEKNGVAAAPQDGNLKEIALMEAKMNKLCDLLDETITRTKDNIVKKQALTYEEIEAEREEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3101 508 Coils Coil 352 379 - -
Mtr3g3101 508 Pfam Replication stress response SDE2 C-terminal 225 304 - -
Mtr3g3101 508 MobiDBLite consensus disorder prediction 362 381 - -
Mtr3g3101 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Mtr3g3101 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Mtr3g3101 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Mtr3g3101 508 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Mtr3g3101 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Mtr3g3101 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3101 Mtr-Chr3 44936812 44944977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3101 1 508 C2H2 Transcription Factor Family AT5G06160 73.281 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3101 K12827 - gmx:100815393 900.582