Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3099 ATGAAGACTCCCAATCCCAAACTCATCCTAATTTGTTTCCTTTTCCTCTTCAACCTTAATCAAACACAAGTAATGTCACTAGCAACCATAGAAACATGCTTAGACACTGTTTGCCACATGAATGAACCACTAATCCGATTCCCGTTCCATATAGAAGAAAAACAAACAAATACATGTGGATACCCTGGGTTCAAAGTATTATGCAATGAAAGTGAAAAAAATCAAACACTCCTTAATCTACCTTATATGGAAAATCTTAGTATCCAAAAAATAAACTATGCCAAACAAGAACTTTTTGTGAATGATCCCAATAACTGTCTCCCAAAACAACTTCTCTCACTCAACCTCTCTACCTCTCCTTTTGATGCCGTTTACTATCAACAATTTACCTTTTTTAACTGTTCATACAACTTGGAATACCTTACCTCTAGGTACAAACCAATAGCTTGTCTTAGTGATTACTCCAAGTACAACGTTTTTGCAACACCTTCACTTACTGTGTTTGTGCACTTGTCGTCTGTCTGTGATTTGGTTGATACCGTTAACGTGCCGGTTCAATCGCCGTTTTTTGATCAAGTGTTGTCGTCTGAACTAAATGATGATCTCCGGTTGTCGTGGAATTCACCGCCATGTGGAAGATGTGAGTCTCATGGTGGACGTTGTGGCTTCAAAAATAACTCTACTTTTGAAATTGCTTGTTACAATGTTCCTTCACGACAAGGGATTTCCCGTGGTGCAAGTTACGCCATAGCCATATGTGCAGGGGTGCCAGCTTTGTTGTGCTTCGTTTCACTATTAAGTTGGATATGTAGCAAGTTCAGAATTGGTACCCATGGTTGGATTTGGGCACGTGAGACAGTTGCAGATTTTGAGTCTCTTCTTGATCATGAATACACCAACACTTCAGGTCTTGATAAGCCAACAATTGAATCCTACCCAAAAATAGTGATAGGTGATGACATACATTTACCAAAACCTAATGGTAAGACATGTCCAATATGCTTGTCAGAATATATGCCTAAAGAGACGGTGAAAACTATGCCAGAATGTGAACATTGCTTTCATGCACAATGCATTGATGAATGGCTTCCACTGAATGCGTCGTGCCCAATTTGTAGAACTTCTCCTCCAAGGTTACAATCACAAGCGAGAGGTGGTAGTGACTAG 1167 0.3967 MKTPNPKLILICFLFLFNLNQTQVMSLATIETCLDTVCHMNEPLIRFPFHIEEKQTNTCGYPGFKVLCNESEKNQTLLNLPYMENLSIQKINYAKQELFVNDPNNCLPKQLLSLNLSTSPFDAVYYQQFTFFNCSYNLEYLTSRYKPIACLSDYSKYNVFATPSLTVFVHLSSVCDLVDTVNVPVQSPFFDQVLSSELNDDLRLSWNSPPCGRCESHGGRCGFKNNSTFEIACYNVPSRQGISRGASYAIAICAGVPALLCFVSLLSWICSKFRIGTHGWIWARETVADFESLLDHEYTNTSGLDKPTIESYPKIVIGDDIHLPKPNGKTCPICLSEYMPKETVKTMPECEHCFHAQCIDEWLPLNASCPICRTSPPRLQSQARGGSD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3099 388 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Mtr3g3099 388 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Mtr3g3099 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 382 - -
Mtr3g3099 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 378 IPR013083 -
Mtr3g3099 388 SMART ring_2 331 372 IPR001841 -
Mtr3g3099 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 382 - -
Mtr3g3099 388 SUPERFAMILY RING/U-box 312 376 - -
Mtr3g3099 388 Pfam Wall-associated receptor kinase C-terminal 180 234 IPR032872 -
Mtr3g3099 388 Pfam Ring finger domain 330 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3099 Mtr-Chr3 44921236 44924515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3099 31 376 C3H Transcription Factor Family AT2G46495 35.143 5.24e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3099 - - gmx:100818969 513.842