Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3088 ATGATCCAAACCTTCACGGTTTTGTTTTCAGGAAATTACTGCACAAAGATTATAAAGAAGAAGCTAACAAAGCTACGTGAGAGTATGGGTTTTCAAACAGCACATAACACTAAGCTGATATCACAACCTGATTTGAAGGCAAAGGAAGACTCGTGCGATGGTCTAATTCCAAGGCCACTAAACTTTACTCAGTTCACTCCCTCTGGTTATGATTCGTGGCTGGTAAAGCACCCTTCTGCATTGAGCTCGTTTGATAGATTGATGAAAGCTGCCATTGGGAAAAGGATCGTCGTATTTTTAGATTATGATGGTACCTTATCACCCATTGTAAATGACCCTGATCGTGCTTTCATGTCCGATGAGATGCGTGCAGCAGTATCTGAAGTTGCTACTTATTTTCCAACAGCAATAATCAGTGGAAGAAGCCGAGAGAAGGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCTGGGAGTCATGGTATGGACATAATGGCACCATCAGGACCAATTAGATCTTCTGACGGCAACCACCAATGCTACAACAACACTCTTGACACAAATGGCAATGAAGTTCCATTTCAACCTGCCAAGAAGTTTTTACCTGCAATTCAAGAGATATTAAGAAAATTGGAGAATGTAATAAAGGACATAGAAGGTGCAAAAATAGAAAACAACAGATTCTGCATCTCTGTACATTTCAGGCAGGTTCATGAAAAGGATTATAACAAATTGGAAGAGAAAGTGAAGTCTGTGCTTGGAAAGAATCCACTGTTCTGCTTGACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCAATAGAATGGAACAAAGGAAATGCTGTTGAATATTTTCTTGACACATTAGGATTAAGCAGTTCCAGCAATTTCCTTCCTGTATATATTGGTGATGATAAAACTGATGAAGATGCTTTTAAGGTTATAAAAAGAATGGGGCAAGGTTATCCGATTATAGTGTCTTCGACTCCAAGAGAAACCGATGCTTTGTACTCTCTGCGTGATCCATCAGAAGTACTAATCTTCTTGTCAAGGCTAGCAAAATGGACGAAGACATATTACTCAAGAAGGCCTTTAAATATTGGTAATTAA 1113 0.3827 MIQTFTVLFSGNYCTKIIKKKLTKLRESMGFQTAHNTKLISQPDLKAKEDSCDGLIPRPLNFTQFTPSGYDSWLVKHPSALSSFDRLMKAAIGKRIVVFLDYDGTLSPIVNDPDRAFMSDEMRAAVSEVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSGPIRSSDGNHQCYNNTLDTNGNEVPFQPAKKFLPAIQEILRKLENVIKDIEGAKIENNRFCISVHFRQVHEKDYNKLEEKVKSVLGKNPLFCLTEGKKVMEIRPSIEWNKGNAVEYFLDTLGLSSSSNFLPVYIGDDKTDEDAFKVIKRMGQGYPIIVSSTPRETDALYSLRDPSEVLIFLSRLAKWTKTYYSRRPLNIGN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3088 370 Coils Coil 236 256 - -
Mtr3g3088 370 Pfam Trehalose-phosphatase 99 344 IPR003337 GO:0003824|GO:0005992
Mtr3g3088 370 SUPERFAMILY HAD-like 97 358 IPR036412 -
Mtr3g3088 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 50 363 IPR044651 GO:0004805|GO:0005992
Mtr3g3088 370 TIGRFAM T6PP: trehalose-phosphatase 93 355 IPR003337 GO:0003824|GO:0005992
Mtr3g3088 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 50 363 - -
Mtr3g3088 370 Coils Coil 205 225 - -
Mtr3g3088 370 CDD HAD_TPP 97 346 - -
Mtr3g3088 370 Gene3D - 186 364 IPR023214 -
Mtr3g3088 370 Gene3D - 96 177 IPR023214 -
Mtr3g3088 370 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 98 317 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3088 Mtr-Chr3 44795326 44805791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3088 94 354 Trehalose Biosynthesis Gene Families AT1G70290 26.354 9.75e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3088 K01087 - gmx:100809194 522.702