Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3080 ATGGATGAAAGCTTATATGATATATTTGAAGACAGAACAGAATTCGGTAACAGCGATGATCTCTTCGCCATTTTGGAGAGTCTAGAAGATTTTACTGATTTTCCTCTTATCAACCAAGCTGAAGCTGCTACTCCAAAAGAGAATGAGGTCACTTCGACATCGAGATTGGTGTCTCAAAAATCAACCTCTTCGCTGCAAGATTCTGAAACTGAACTTGAAACTGAACCCAAAAGGAAGAGACAGAAGCTGACACCAACTTTGCTTGAGGAACAGATTAACAGTGTTGATGGACAACAAAGGGTTTCTCATATTACTGTGGAGCGAAACAGAAGAAAGCAAATGAATGAGCATTTGTCTGTTTTAAGGTCACTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCACAGAGTTGCAACAACTACTCCAAGCCCTTGAAGCCAAGAAACAAAGAAAAGTATACAGTGAAGTACTAAGTCCAAGATTAGTTCCAAGTCCAAGACCTTCACCACTAAGTCCAAGAAAACCACCTCTAAGTCCAAGACTAAACTTGCCAATTAGTCCAAGAACTCCACAACCAACTAGCCCTTACAAACCACGAATGCAACAAAGCTACATTGCACTTTCACCTCTTGATCCATCACCTACTAGTTCCTCTACTTCCTCAGTCAATGATAACATCAATGAACTTGTTGCTAATTCAAAGTCTCCTATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTGTTTCTCAAAGAATTCCAGGACAACCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTCCATGTTAACATTAATAGTACTTCTGATGATACCATGTTGAACTCCTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCTGAAGAACTTGCTCAACAAATCCAGCAAACATTCTGCTAA 990 0.3919 MDESLYDIFEDRTEFGNSDDLFAILESLEDFTDFPLINQAEAATPKENEVTSTSRLVSQKSTSSLQDSETELETEPKRKRQKLTPTLLEEQINSVDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYITELQQLLQALEAKKQRKVYSEVLSPRLVPSPRPSPLSPRKPPLSPRLNLPISPRTPQPTSPYKPRMQQSYIALSPLDPSPTSSSTSSVNDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQPLKIISALEDLALEILHVNINSTSDDTMLNSFTIKIGIECQLSAEELAQQIQQTFC* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3080 329 Gene3D - 90 163 IPR036638 GO:0046983
Mtr3g3080 329 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 329 - -
Mtr3g3080 329 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Mtr3g3080 329 MobiDBLite consensus disorder prediction 39 84 - -
Mtr3g3080 329 MobiDBLite consensus disorder prediction 174 206 - -
Mtr3g3080 329 Coils Coil 142 162 - -
Mtr3g3080 329 SMART finulus 104 155 IPR011598 GO:0046983
Mtr3g3080 329 PANTHER TRANSCRIPTION FACTOR FAMA 1 329 IPR044283 GO:0003700|GO:0010052
Mtr3g3080 329 CDD bHLH_AtFAMA_like 102 172 - -
Mtr3g3080 329 MobiDBLite consensus disorder prediction 171 210 - -
Mtr3g3080 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 170 IPR036638 GO:0046983
Mtr3g3080 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Mtr3g3080 329 MobiDBLite consensus disorder prediction 44 69 - -
Mtr3g3080 329 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3080 Mtr-Chr3 44710833 44713615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3080 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 54.420 5.17e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g3080 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3080 K20558 - gmx:100777437 423.32