Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3078 ATGGAAAAACAGAGTATCCTATGCAAATACACAGAACATGAAACTGTTACAAAAAAACTCATCACAACAAAGAAAAATGGTCACAGTAACAACAACAACAATACAACCATAAACCCAAGAGTTGTAAGAATATCTGTCACCGACCCAGATGCAACCGACTCATCAAGTGATGAAGAAGGACAAATACAAACCTTCAGAAACAGAACAAAACGTTATATAAACCGTATTGAAATTGAAACCACTACAAAAGCTGTTGTTAGCAGAAAAAGACCCGCCGGAGAAACATCAACTGTACGACGGCCGGCGAAGATTCCGGCAGTCAACAACGGTAAAAAGTTCCGTGGTGTACGACAGAGACCATGGGGTAAGTGGGCTGCAGAGATTCGAGATCCTGCACGGAGGGTTCGTCTTTGGTTAGGTACTTTTGAAACTGCAGAAGAAGCTGCTATGGTTTATGACAATGCCGCTATTAAGCTTCGTGGACCAGACGCTTTAACAAACTTCCTCACACCGCCGCTGAAAGAAGATATTCCGGTAGAACCTTCCACCGTGAAACCAGAAATGAAGGTTGTTGTTGATGCTGATGTTGAAGGTGAAGCTTCTGGCCTTGGTAACTCCGGTTATGATTCCGGTGAAGAAATATGTGTTCCACTTTCTTCTCCAACTTCAGTTTTAAATTTCCGGAGTAACTCTGGCGAAGAGGAACAAAGTGAAGCTTGTGAGGTTTTCAGAGATTGTCAAGGTGAGACAACAACAAATTTGTTTGATGAAACTGCGTCATTTTTTCAACAAGATATGCCTTGTTGGGATGATGTGTTCAACTTCCAAACACCAGATTTTCCTACGTTGTTTGAAGAAGACAGTAACAAAATGATGTTTGAAGAAAATACAACGCCTTTTTTGTTTGATGAAGATTTAAGTGACAGCATTGTTCTTGCTGACTCACTCATAGATTTTGAAAAAGCATGTTTTCCTTCACCTTCTTCTTCTTCTACTACATCTTTGTGTCAAGTGGATGATTTCTTTCAAGACATATTGTTAGGTTCAGATCCTCTTGTTGTGCTTTGA 1068 0.4036 MEKQSILCKYTEHETVTKKLITTKKNGHSNNNNNTTINPRVVRISVTDPDATDSSSDEEGQIQTFRNRTKRYINRIEIETTTKAVVSRKRPAGETSTVRRPAKIPAVNNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFLTPPLKEDIPVEPSTVKPEMKVVVDADVEGEASGLGNSGYDSGEEICVPLSSPTSVLNFRSNSGEEEQSEACEVFRDCQGETTTNLFDETASFFQQDMPCWDDVFNFQTPDFPTLFEEDSNKMMFEENTTPFLFDEDLSDSIVLADSLIDFEKACFPSPSSSSTTSLCQVDDFFQDILLGSDPLVVL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3078 355 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Mtr3g3078 355 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Mtr3g3078 355 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Mtr3g3078 355 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Mtr3g3078 355 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Mtr3g3078 355 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Mtr3g3078 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 346 - -
Mtr3g3078 355 CDD AP2 111 168 IPR001471 GO:0003700|GO:0006355
Mtr3g3078 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 7 346 - -
Mtr3g3078 355 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3078 Mtr-Chr3 44651288 44653206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3078 8 286 AP2-EREBP Transcription Factor Family AT4G27950 43.854 1.24e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g3078 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3078 - - gmx:100807598 374.785