Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3055 ATGAGAAAGTGTTGGTTTGTTGGAGTGTTGTTTGTGGTGGCATATGGAAGCTTGTTGGTAGAAGGGTACCCAATTGAAGATCTAGTTGTGAAGCTACCAGGCCAACCCAAAGTTAAATTCAGTCAATATGCTGGTTATGTTGATATAGATATAAAACATGGGAGGAGTCTCTTCTATTATTTTGTTGAGGCTGACCATCTCCCTCACAAAAAGCCTCTCACCCTATGGCTCAATGGAGGTCCGGGATGTTCCTCTATTGGAGGAGGTGCTTTTACTGAATTGGGTCCATTTTATCCTTCTGGTGATGGACGCGGTCTACGAAAAAATTCAAAGTCCTGGAATACAGTTTCCAATATCCTCTTTGTGGAGTCTCCCGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACATTGGTGACGCCTCCACAGCCAATGACATGCTTTTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCATACAAATCGAGGAAGTTGTTTCTTACCGGAGAAAGTTATGCAGGACATTACATACCTCAATTAGCCAATGCCATTCTTGATTATAATGCTCATTCATCAAGTTTCAAATTCAACATAAAAGGAGTTGCCATTGGAAACCCACTTCTGAAATTGGATCGTGATAGACAAGCAACATATGAATATCTCTGGTCACACGGAATGATTTCGGATGAAATTGTTCTTGCCATTAGGAATGATTGCAATTTTGATGCATCTTATGATAACTTATCTAAATCATGCAAAGAAGCCATAAATGTCACTAGGAAAATTGTGAGCCAGTATGTAGACAACTATGATGTGATTCTTGATGTGTGTTATCCAGCTATAGCTGAACAAGAAATCAGATTGAAAAAGATGGCTACTAAAATAAGTTTAAGTGTAGACGTTTGTATAGATTATGAAAGCTTTAATTACCTCAACCTGCCTGAGGTTCAGAAGGCTCTCCATGCCAACCGTACTAATCTGCCATATCCATGGGGCATGTGTAGTGATGTTTTGAATTATAGCAACACAGATCCTGACGTTGATATGCTTCCAATTCTCAAACGGATAGTTCAAAATCATATTCCAATATGGGTTTACAGTGGAGACCAAGATTCAGTTGTTCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCATGACATGAAATTCAAGATTACAGACTCATATAGAGTTTGGTTCCACAAAGGGCAGGCTGGAGGTTGGGTAACTGAGTATGAAAATTTGTTGACTTTCGCCACTGTAAGAGGAGCGGGTCACATGGTGCCATATGGACAACCTTCTAGGGCATTACATCTATTCAGCTCCTTTGTGCATGGAAAGAGATTGCCAAACACTACTAAACCCTCAATTGGAGAATGA 1398 0.3999 MRKCWFVGVLFVVAYGSLLVEGYPIEDLVVKLPGQPKVKFSQYAGYVDIDIKHGRSLFYYFVEADHLPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPSGDGRGLRKNSKSWNTVSNILFVESPAGVGWSYSNTTSDYNIGDASTANDMLLFMLKWYEKFPSYKSRKLFLTGESYAGHYIPQLANAILDYNAHSSSFKFNIKGVAIGNPLLKLDRDRQATYEYLWSHGMISDEIVLAIRNDCNFDASYDNLSKSCKEAINVTRKIVSQYVDNYDVILDVCYPAIAEQEIRLKKMATKISLSVDVCIDYESFNYLNLPEVQKALHANRTNLPYPWGMCSDVLNYSNTDPDVDMLPILKRIVQNHIPIWVYSGDQDSVVPLLGSRTLIRELAHDMKFKITDSYRVWFHKGQAGGWVTEYENLLTFATVRGAGHMVPYGQPSRALHLFSSFVHGKRLPNTTKPSIGE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3055 465 Gene3D - 353 452 - -
Mtr3g3055 465 SUPERFAMILY alpha/beta-Hydrolases 19 459 IPR029058 -
Mtr3g3055 465 PANTHER CARBOXYPEPTIDASE 6 459 - -
Mtr3g3055 465 Pfam Serine carboxypeptidase 34 452 IPR001563 GO:0004185|GO:0006508
Mtr3g3055 465 Gene3D - 306 342 - -
Mtr3g3055 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 459 IPR001563 GO:0004185|GO:0006508
Mtr3g3055 465 ProSitePatterns Serine carboxypeptidases, serine active site. 171 178 IPR018202 GO:0004185
Mtr3g3055 465 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Mtr3g3055 465 Gene3D alpha/beta hydrolase 25 282 IPR029058 -
Mtr3g3055 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Mtr3g3055 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Mtr3g3055 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Mtr3g3055 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3055 Mtr-Chr3 44411370 44414801 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3055 314 455 Calmodulin-binding Proteins AT2G22960 28.169 2.06e-12 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3055 3 44411370 44414801 Mtr3g3055 3 44411370 44414801 ECH