Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3048 ATGTCGAACACTACTACTGGTCAGGTGATCAAGTGCACAGCTGCGGTTGCATGGGAGGCGGGGAAGCCACTGGTGATGGAAGAAGTAGAGGTGGCACCACCGCAGGCCGGTGAAGTCCGTCTCAAGATACTCTTCACCTCCCTTTGTCACACCGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGAATATTTGGTCATGAAGCTGGAGGGATCGTGGAGAGTGTAGGCGAGGGTGTGACACATCTAACACCAGGCGATCATGCCCTGCTTGTATTCACAGGGGAGTGTGGGGACTGTCCACATTGTATGTCGGAGGAAAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGGGGTGTTATGATCAATGACAACCAGTCAAGATTCTCTATTAAGGGACAGCCCATTCACCATTTCGTCGGTACATCTACATTCAGCGAGTACACTGTGGTTCATGCCGGATGTGTTGCAAAGATCAACCCTGATGCACCACTTGACAAAGTTTGTATTCTCAGCTGTGGAATATGCACAGGTCTTGGTGCTACTATCAATGTAGCTAAACCAAAACCCGGTTCATCTGTTGCTATCTTTGGCCTTGGAGCTGTTGGGCTTGCGGCTGCTGAAGGAGCCAGGATATCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGGGTAAATGAGTTTGTAAACCCGAAAGATCATAACAAACCTGTTCAACAAGTAATTGCTGAAATGACAAATGGAGGTGTGGATCGTGCTGTTGAATGTACCGGGAGCATCCAGGCCATGATCTCAGCTTTCGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTTAAAACACATCCTATGAATTTGTTGAATGAAAGGACTCTTAAGGGTACCTTTTATGGTAACTACAAGCCTCGCACCGATCTTCCTAATGTTGTAGAGAAGTACATGAAAGGGGAGCTGGAACTTGAGAAATTCATCACTCACTCAATCCCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGATGCATCATCCGAATGGAGGAGTAA 1146 0.4599 MSNTTTGQVIKCTAAVAWEAGKPLVMEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLTPGDHALLVFTGECGDCPHCMSEESNMCDLLRINTDRGVMINDNQSRFSIKGQPIHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHNKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHSIPFSEINKAFDYMLKGESIRCIIRMEE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3048 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
Mtr3g3048 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Mtr3g3048 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Mtr3g3048 381 Gene3D - 184 322 - -
Mtr3g3048 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 344 IPR036291 -
Mtr3g3048 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Mtr3g3048 381 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 379 - -
Mtr3g3048 381 Gene3D - 20 371 - -
Mtr3g3048 381 PANTHER ALCOHOL DEHYDROGENASE 5 379 - -
Mtr3g3048 381 CDD alcohol_DH_plants 10 378 - -
Mtr3g3048 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3048 Mtr-Chr3 44350564 44353232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3048 38 371 Monolignol Biosynthesis Gene Families AT1G72680 24.629 3.30e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3048 K18857 - gmx:100801918 721.85