Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3035 ATGGATGATTCTTCTTCTGCAGCTGAAGACACCAAGAGTTGTCCACGTGGTCACTGGCGACCCGCCGAAGATGAAAAACTTCGTCAACTTGTTGAACAATATGGTGCCCAAAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAGCTAGATCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTTGCGGCTCATCGGATTCACGGAAACAAATGGGCACTAATAGCAAGACTTTTCCCTGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCTAGAAAACAAAGGGAACAATCCAAGTTATGTGGCAAGAGAAGTTTTCAAGAAGTTTTTTCTAACTCCTCTATACTTAATTTCCCTTACACCACAAGAATTGGATATGAGAATGGAAGATTCTATGATAATACACCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCTTCTATGTCAACAAAACCAAACACTACTACTGCTTCTACTATTTTACCGGATAATTGCATCACAAGAAAAGGATCTAATGTTTATAAAGGCTCGGATAGATCATTTCTCTACAGAATCTGTCCAAATCAAGCATTCTCATCACTTCCAAATTACAAGAGGGTTGCTCCAAATGCTTTTGGTTTTTTAAATTCTTCTGATGATGGAAGGATAAAGAAGGATTTGGTGAGTAGTTTATGTGATAACTCATCTACATTAATCACAAACTTAAAGTCTTCCATGGAGAAAGAGCAAGATCGCGATGAGGTCGAAATTGAGCATCACAAAGAAGTTCCATTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATAA 879 0.3811 MDDSSSAAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQEVFSNSSILNFPYTTRIGYENGRFYDNTPSSSLASWNFASMSTKPNTTTASTILPDNCITRKGSNVYKGSDRSFLYRICPNQAFSSLPNYKRVAPNAFGFLNSSDDGRIKKDLVSSLCDNSSTLITNLKSSMEKEQDRDEVEIEHHKEVPFIDFLGVGVSSS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3035 292 SMART sant 67 115 IPR001005 -
Mtr3g3035 292 SMART sant 15 64 IPR001005 -
Mtr3g3035 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Mtr3g3035 292 Pfam Myb-like DNA-binding domain 19 79 - -
Mtr3g3035 292 PANTHER TRANSCRIPTION FACTOR MYB56 5 290 - -
Mtr3g3035 292 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Mtr3g3035 292 Gene3D - 16 67 - -
Mtr3g3035 292 CDD SANT 19 60 IPR001005 -
Mtr3g3035 292 CDD SANT 79 110 IPR001005 -
Mtr3g3035 292 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Mtr3g3035 292 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g3035 292 Gene3D - 70 130 - -
Mtr3g3035 292 PANTHER MYB PROTEIN-RELATED 5 290 - -
Mtr3g3035 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr3g3035 292 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3035 Mtr-Chr3 44207700 44209513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3035 14 292 MYB Transcription Factor Family AT1G17950 43.448 8.67e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g3035 Myb_DNA-bind_6 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3035 K09422 - gmx:100817328 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3035 3 44207700 44209513 Mtr3g3035 3 44207700 44209513 ECH