Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3012 ATGGCTGTGGAGTACTCAAAACAGTTGTTTCTCATGGTGGTTGTCGCTGTCTTTTATACAAAAGCAGCAACTCAACCGATGTCACTACCAAACTGTACAGCAAAGTGTGGTTCCATCAAAATCCCCTTCCCATTTGGAATCACCAAAGATTGCTCCCTAGACAACGCTTTCCTCATCAATTGCAACAAAACATCATCTACTGCATCAAACTCAACAAAACACGTAGCTTTTTTGTCAAAAACTAATCAACGTGTCTTAAATATATCACTTAATGGTGAACTGCATGTTGCATGGCCAGTAGCCAGACATTGCTATCCAAAAAAGAGCAAACCTACAACACCAGATATCAAGATGCCACATTTTCACGTCTCGCCAACTCAAAACAAGTTGATAGCAGTTGGATGTGACACAATGGGACTACTCGAAGCAATTGATTCTAAAGGAAACACATACACCACTGCATGTGTGGCCTTGTGCAACAGGCTTAGTGATATTGTGGCCAATGAATCTTGTTCCGGCCCAGGTTGTTGTGAGATTTCAATACCCAAAGGTCGTGTGTTTACGGAAGTTGCCTATATTTCTGAACACGGATTGAACAATAATCAGGCATTAGTACAGCCCTTCAATCCATGTGGTTATACGTTTTTGGTGGAAAATGGAGCCTACCGCTTTGCAATCACAGACCTCCAAAAGCTAAAGAAGAGGAACTTTCCTGTGTTGTTGGACTGGGCAGTAGGGAACCAAACGTGCCAGCAAGCTCGGAAGGATCTTTCCACTTATGCATGTAAGGCAGACAAAAGTAAATGTTATGATGCACCAACTCACAAATCTGGTTACCTCTGCAGATGCAGGGATGGATATTGGGGTAATCCTTACCTCAACCATGGCTGCCAAGATGTTGATGAATGCAAGGAATCCAATGACTGTTTTAAGGGGGCGACATGCACCAATCTTCCTGGAAGTTACCATTGTTTATGCCCAAAAGGATATGAAGGAGACGGAAAAAGATGCAGTCAAAAATCCATTACCAAATCAAGGAAAGAGTACATATTGGTCACTGCATTGAGTGATGTAAGCCTCGTAGGACTACTGGTGGGAAGCTTTTATGCTTATTGGGCTTTGAAGAAAATAAAGATCATTAAACTTAAAGAAGAGTTTTTTAAGCAAAACGGTGGCTTACTGTTAGAACAACAAATAGTGAAGCATGGAGGGTCGTCTAAAACACTTAAAATCTTCACTATTGAGGAGTTAAATGAGGCAACCAGCAACTTCAATGAAGGCAAAATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTAGAAGATAAAAGTATTGTAGCAATAAAGAAGTCAAAAATCAGTGACCCAAACCAGATTGAGTCGTTCATCAATGAAGTGGCCGTGCTTTCCCAAATCAACCATAGGAATGTGGTAAAACTTGTAGGTTGTTGTTTAGAAACAGAAGTTCCATTGCTTGTTTATGAATTTATTCCCAATGGTACAGTTTATGAGCATATTCATGACCAAAACGAATCTAGAAAGCTTACATGGAAAACAAGATTGAGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATACTTACATTCTGCTGCTTCCACACCAATCATACATAGAGATGTCAAATCTACAAATATACTACTAGATGAAAATCTCACTGCAAAGGTGGCTGACTTTGGAGCTTCAAAGATCGTTCCTCTTGATAAAACTCAGATAACCACCCTAGTGCAAGGGACACTCGGGTATCTTGACCCTGAGTACTTCCACACAAGCCAGTTAACAGAGAAGAGTGACGTCTATAGCTTCGGAGTTGTCCTAGCAGAGCTACTAACAGGAGAAAAGGCATTATCTTTTGGCAGGCCAGAGGTAGATAGAAACCTTGCAATGTACTTTGTGTCTTGGATTAAAGAGGATCAATTACTTCATATTCTAGACAAAAATATAGATGAGAAAAATATTGAACATCTAAAGGAAGTTGCCCTAATTGCAGAAAGGTGTTTAAGGGTGAAGAGTGAGGAAAGACCAACCATGAAAGAAGTGGCAATGGGACTAGAGGGAATATTAGTTACTGAAGAGAATGAAAACATGATCAATGCAACACCGTCCGTTATCAATGTTGAAGATGGCGATGGCGGAAGTGCAAGTCAACCTATGTCACTACCAAACTGTCAAACAAAATGTGGTTCTGTCACCATACCCTTTCCATTTGGAATCACAAAAGATTGTTCCCTCGACAGTAAGTTCATCATTAGTTGCTACAATACATCTTCAACACCAAAATCCACAACATACAAACCTTTCTTGGCAAACACTAACCAAAGGGTCCTAAATATCTCACTCAATGGTGAATTGCGTGTCGCATGGCCAGTAGCCAGTCATTGTTATGCAAACAGTGTCATGCTCTTGGCCCAAACATCTCAAGATATCATCGTGACGCATTTTCAGGTCTCACCGACTCGAAACAAATTGATAGTAGTTGGCTATTACACAGTTGGACTACTCACAACATATGATTCTGATGGACACAACTATACCACTGGATGTTTGACTTTGTGCAACACGAATGATAATATCACGGTCCATGAACCTTGTTCTTGTGAGAGTTCAATGCCCACCGGTCATGTGACAACAGGGGTATCATATGATTCTGCAAGTGTATTGAATAATCACATAGTAGAACATGACTTCCGTTCATGTGGTTATGCTTTTGTGGTTGAATATGGAGCCTACAGCTTCAATTCCACAGACCTCAAGTTGAATAACAAGGAGTTTCCTGTGTTGTTGGACTGGGCAGTAGGGAACCAAACTTGTCATCAAGCTCAGAAGGATCTTTCCACTTATGCGTGTAAGGCCGACAAAAGTACATGTTACGATGCAACAACTGACAGATCTGGTTACCTTTGTAGATGCTCTCATGGATATCGGGGAAATCCTTATCTCGTTCATGGTTGCCAAGATGTTAATGATTGCATGGAATCCAATTACTGTGTTGAGGAGGCGAGATGCATCAATCATCCCGGAAGCTACCATTGTTCATGCCCAGAAGGATATGAGGGAGACGGGAAAAATAATGGAACAGGATGCAGTCCGAACTCCAGTACCAAATCAAGGAATGATATCTTGGATATCATTGCAGGTGTCTGCGTAGGCCTCGTAGCACTACTGGTAGGAAGCATGTATGCATATTTAGCATTGAAGAAAAGAAGTCTTGTTAAACTTAAAGAACATTTTTTTCAACAAAACGGTGGTTTACTGTTACAACAACAAATAGCAAAGCATGGAGGATCAGCCGGAACACCTAAAGTCTTCACTATTGAGGAGCTAAATAAAGCAACCAACAACTTCAATGAAAGCAGGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAACAGAATTGTCGCAATAAAAAAGTCCACAATCAGTGACCAAAACCAGATTGAGCCGTTCATCAATGAAGTGATCATTCTTTCTCAAATCAACCATAGAAATGTGGTACAGCTTTTGGGTTGCTGTTTAGAAACAGAAGTTCCATTGCTTGTTTATGAGTTTATTTCCAATGGTACTGTTTATGATCATCTTCATGATCAAAACCAGTCTATAAAGCTTACATGGAACACAAGATTAAGAATAGCAACAGAAACTGCTGGAGTCTTGGCATACTTACATTCTGCTGCTTCTACTCCAATCATTCATAGAGATATAAAATCTACAAACATCCTCCTAGATGGCAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCAAAGATTGTTCCTCTTGATCACACTCAGATAAACACTCTTGTGCAGGGGACATTGGGGTATCTTGACCCAGAATACTTCCAGACAAGCATGTTAACTGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTTCTAGCAGAGCTATTGACAGGAAAGAAAGCACTATGTTTTAGCAGGCCAGATGTAGAAAGAAGCCTTGCAATGCATTTTGTTTCTTCAATGAAAGAAGATCAGTTGCTTCATATTCTGGACAGCAGCATTGATTGGGAAGATGTTGATCATCTAAAGGAAGTTGCCATAATTGCAGAAAGGTGTTTAAAGATGAACAGTGAGGAAAGACCGACCATGAAAGAAGTGGCAGTGGAACTAGAGGGAATATTAGTTATTGAAGAGCAGCCTTTGGGAAGTGAGTCTTCAAATGAGACGTCATCCATTAAATGTTGA 4254 0.4053 MAVEYSKQLFLMVVVAVFYTKAATQPMSLPNCTAKCGSIKIPFPFGITKDCSLDNAFLINCNKTSSTASNSTKHVAFLSKTNQRVLNISLNGELHVAWPVARHCYPKKSKPTTPDIKMPHFHVSPTQNKLIAVGCDTMGLLEAIDSKGNTYTTACVALCNRLSDIVANESCSGPGCCEISIPKGRVFTEVAYISEHGLNNNQALVQPFNPCGYTFLVENGAYRFAITDLQKLKKRNFPVLLDWAVGNQTCQQARKDLSTYACKADKSKCYDAPTHKSGYLCRCRDGYWGNPYLNHGCQDVDECKESNDCFKGATCTNLPGSYHCLCPKGYEGDGKRCSQKSITKSRKEYILVTALSDVSLVGLLVGSFYAYWALKKIKIIKLKEEFFKQNGGLLLEQQIVKHGGSSKTLKIFTIEELNEATSNFNEGKILGQGGQGTVYKGVLEDKSIVAIKKSKISDPNQIESFINEVAVLSQINHRNVVKLVGCCLETEVPLLVYEFIPNGTVYEHIHDQNESRKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDENLTAKVADFGASKIVPLDKTQITTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGEKALSFGRPEVDRNLAMYFVSWIKEDQLLHILDKNIDEKNIEHLKEVALIAERCLRVKSEERPTMKEVAMGLEGILVTEENENMINATPSVINVEDGDGGSASQPMSLPNCQTKCGSVTIPFPFGITKDCSLDSKFIISCYNTSSTPKSTTYKPFLANTNQRVLNISLNGELRVAWPVASHCYANSVMLLAQTSQDIIVTHFQVSPTRNKLIVVGYYTVGLLTTYDSDGHNYTTGCLTLCNTNDNITVHEPCSCESSMPTGHVTTGVSYDSASVLNNHIVEHDFRSCGYAFVVEYGAYSFNSTDLKLNNKEFPVLLDWAVGNQTCHQAQKDLSTYACKADKSTCYDATTDRSGYLCRCSHGYRGNPYLVHGCQDVNDCMESNYCVEEARCINHPGSYHCSCPEGYEGDGKNNGTGCSPNSSTKSRNDILDIIAGVCVGLVALLVGSMYAYLALKKRSLVKLKEHFFQQNGGLLLQQQIAKHGGSAGTPKVFTIEELNKATNNFNESRILGQGGQGTVYKGVLQDNRIVAIKKSTISDQNQIEPFINEVIILSQINHRNVVQLLGCCLETEVPLLVYEFISNGTVYDHLHDQNQSIKLTWNTRLRIATETAGVLAYLHSAASTPIIHRDIKSTNILLDGNLIAKVSDFGASKIVPLDHTQINTLVQGTLGYLDPEYFQTSMLTEKSDVYSFGVVLAELLTGKKALCFSRPDVERSLAMHFVSSMKEDQLLHILDSSIDWEDVDHLKEVAIIAERCLKMNSEERPTMKEVAVELEGILVIEEQPLGSESSNETSSIKC* 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3012 1417 ProSiteProfiles EGF-like domain profile. 299 338 IPR000742 -
Mtr3g3012 1417 SUPERFAMILY Protein kinase-like (PK-like) 1107 1393 IPR011009 -
Mtr3g3012 1417 Pfam Wall-associated receptor kinase galacturonan-binding 732 794 IPR025287 GO:0030247
Mtr3g3012 1417 Pfam Wall-associated receptor kinase galacturonan-binding 32 92 IPR025287 GO:0030247
Mtr3g3012 1417 ProSiteProfiles Protein kinase domain profile. 1124 1397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3012 1417 Gene3D Laminin 248 338 - -
Mtr3g3012 1417 Gene3D Laminin 944 1037 - -
Mtr3g3012 1417 CDD STKc_IRAK 1130 1396 - -
Mtr3g3012 1417 SUPERFAMILY EGF/Laminin 994 1032 - -
Mtr3g3012 1417 Pfam Protein kinase domain 425 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3012 1417 Pfam Protein kinase domain 1124 1389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3012 1417 Gene3D Phosphorylase Kinase; domain 1 1096 1199 - -
Mtr3g3012 1417 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 723 1407 - -
Mtr3g3012 1417 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 17 704 - -
Mtr3g3012 1417 SMART egf_5 249 298 IPR000742 -
Mtr3g3012 1417 SMART egf_5 998 1038 IPR000742 -
Mtr3g3012 1417 SMART egf_5 945 994 IPR000742 -
Mtr3g3012 1417 SMART egf_5 302 338 IPR000742 -
Mtr3g3012 1417 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1011 1022 IPR000152 -
Mtr3g3012 1417 Pfam Calcium-binding EGF domain 299 337 IPR001881 GO:0005509
Mtr3g3012 1417 Pfam Calcium-binding EGF domain 995 1034 IPR001881 GO:0005509
Mtr3g3012 1417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Mtr3g3012 1417 ProSitePatterns Calcium-binding EGF-like domain signature. 299 324 IPR018097 GO:0005509
Mtr3g3012 1417 ProSitePatterns Calcium-binding EGF-like domain signature. 995 1020 IPR018097 GO:0005509
Mtr3g3012 1417 Gene3D Phosphorylase Kinase; domain 1 392 499 - -
Mtr3g3012 1417 Gene3D Transferase(Phosphotransferase) domain 1 1200 1412 - -
Mtr3g3012 1417 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
Mtr3g3012 1417 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 704 IPR045274 GO:0007166
Mtr3g3012 1417 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 723 1407 IPR045274 GO:0007166
Mtr3g3012 1417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1245 1257 IPR008271 GO:0004672|GO:0006468
Mtr3g3012 1417 CDD EGF_CA 995 1029 - -
Mtr3g3012 1417 SUPERFAMILY Protein kinase-like (PK-like) 406 691 IPR011009 -
Mtr3g3012 1417 ProSitePatterns EGF-like domain signature 2. 324 337 IPR000742 -
Mtr3g3012 1417 SUPERFAMILY Growth factor receptor domain 245 876 IPR009030 -
Mtr3g3012 1417 CDD STKc_IRAK 430 696 - -
Mtr3g3012 1417 ProSiteProfiles EGF-like domain profile. 995 1032 IPR000742 -
Mtr3g3012 1417 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Mtr3g3012 1417 CDD EGF_CA 299 337 - -
Mtr3g3012 1417 SMART serkin_6 424 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3012 1417 SMART serkin_6 1124 1397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3012 1417 ProSiteProfiles Protein kinase domain profile. 424 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3012 1417 SMART egfca_6 299 338 IPR001881 GO:0005509
Mtr3g3012 1417 SMART egfca_6 995 1038 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3012 Mtr-Chr3 44052219 44059362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3012 9 698 Receptor kinase-like Gene Family AT1G21230 46.045 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Mtr3g3012 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3012 - - mtr:MTR_3g088780 1404.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0820 1 9292213 9295256 Mtr3g3012 3 44052219 44059362 PCT