Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3009 ATGGATTTTTGTAACGATGAACCTGAAAAAAATAGCAAAGACATGGATGTGCACTCAAAACAGCTGCTGCTAATGGTGGTCGCTGTCATTTATACAAAAGTTGCGACTCAACCGGTGTCACTACCAAATTGTCCAACAAAGTGTGGCAATGTCACTATTCCCTTCCCATTTGGAACCACCAATAATTGTTCTCTAGACAACACCTTTCTCATTGATTGCAACAAAACATCTTCAACCTCAACAGACGTACCATTCTTGCCACAGACTAATCAAAGTGTTCTAAACATCTCACTCGACGGTGAACTGCGTGCTGCATGGCCAGTAGCAAGTGATTGCTATTCAGAAAATGGTACAAAATTGAGCCAAATAATTCAGGATATCAACATGACACATTTTCACATCTCGCCAACTAAAAACAAGTTGATAGCAGTTGGTTGTGACACGGTGGGAGTATTAGAAGCAGCTGATTCTGGGCGAAAAACCTACGCCACAGGATGTGTTGCTTACTGCAACAATCGTACTGATATTGTCGCCAATCAACCTTGCTCTGGTATTGGTTGCTGTGAGATTCAATTACCCCAAGTTCACATGTTAACGCGAGTGCTCTATGGTTCTTATGGAGGCATATTTTACAATCAAAGTCACTCAAAAGTACATGACTTCAATCCATGTGGCTATGCTTTTTTGATTGAAAATGGATCCTACAGCTTAACACGATCAGACCTCCTCAAGTTGAAGAATAAGGAGTTTCCTGTGTTGTTGAACTGGACAGTAGGAAACCAAACATGCCTGCAAGCTCAGAAGAATCTTTTCAATTATGCATGTAAGGCCGAGAAAAGTACATGTTACGATCCAGGAACCAACAAATCTGGTTACCTTTGCAGATGCTTTGGTGGATATCGGGGAAATCCTTACCTCATTAATGGTTGCGAAGAATATAATGAATGCTTGGAGCACAATGATTGTGTTGAGGAGGCAACATGCATCGATCTTCCTGGGAGCTACCATTGTTTATGCCCAGAAGGATATGAGGGAGACGGGAAAAATAATGGAACAGGATGCAGTCCAAAATCCAGTACCAAATCAAGGAAAGATATCATGTTAACTATCGCATTGAGTGTCAGTGCAAGCCTCGTAGCACTGCTGATTGGAAGCTTTTATGCATATTTGGCATTCAAGAAAAGAAAGTTCATTAAACTTCAAGAACATTTTTTTCAACAAAATGGTGGCTTACTGTTACAACAACAGATAGGGAGGCACGGAGGTTCAACTGAAATAGCTAAAGTCTTCAAAGTTGAGGAGCTAAAAGAAGCAACCAACAACTTCGATCAAGGCAAGATCCTAGGCCAAGGTGGTCAAGGAATTGTTTACAAAGGAGTTTTACAAAATAACAGAATTGTAGCAATAAAAAAGTCCAAAATAAGTGACCCGAACCAGGTTGAGTCGTTCATCAATGAAGTGGTCGTACTTTCCCAAATCAACCATAGAAATGTGGTAAAGATCTTGGGCTGTTGTTTAGAGACAGAAGTTCCCTTAGTTGTGTATGAATTTATTCCCAATGGTACTGTTTATGAGCATCTTCATGACGAAACCCAATCTATAAAGCTTACATGGAAAACAAGGTTAAGAATTTCAAAAGAAATAGCCGGTGTCCTGGCATACTTACACTCTGCTGCTTCGACACCAATCATACATAGAGATGTGAAATCTTCAAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAAATAAACACTCTAGTTCAGGGAACATTGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAATTAACAGAGAAGAGTGATGTTTATAGTTTTGGAGTAGTCCTAGCAGAGCTACTGACAGGAAAGAAAGCGCTATCTTTTGGGAGGCCTGAGGTTGATAGAAACCTTGCCGCATACTTTGTTTCTTCGATGAAACAGGGTCGGTTACTTCATATTTTGGACAAAAATATAGATGAGGCAAATATTGAGCAACTAAAAGAGGTTGCCCATATTGCAGAACGGTGTTTAAGGGTGAAGGGCGAGGACAGACCAACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATATTAGTTGTTGAAGAGCGACGTTGGGGAAGCGACAATTTATCTTCAGAAGAGGCTGAAAACTTGCTTAAAACAGCACGGTCTATTAAAAACATTGAAGATGTCGTTGGTGGAAGTGGCATTAATTCTTATGAATCCTATAGCTTAAACCAGATTTCGATGTCATTGATTGGTGGAAGATGA 2322 0.4035 MDFCNDEPEKNSKDMDVHSKQLLLMVVAVIYTKVATQPVSLPNCPTKCGNVTIPFPFGTTNNCSLDNTFLIDCNKTSSTSTDVPFLPQTNQSVLNISLDGELRAAWPVASDCYSENGTKLSQIIQDINMTHFHISPTKNKLIAVGCDTVGVLEAADSGRKTYATGCVAYCNNRTDIVANQPCSGIGCCEIQLPQVHMLTRVLYGSYGGIFYNQSHSKVHDFNPCGYAFLIENGSYSLTRSDLLKLKNKEFPVLLNWTVGNQTCLQAQKNLFNYACKAEKSTCYDPGTNKSGYLCRCFGGYRGNPYLINGCEEYNECLEHNDCVEEATCIDLPGSYHCLCPEGYEGDGKNNGTGCSPKSSTKSRKDIMLTIALSVSASLVALLIGSFYAYLAFKKRKFIKLQEHFFQQNGGLLLQQQIGRHGGSTEIAKVFKVEELKEATNNFDQGKILGQGGQGIVYKGVLQNNRIVAIKKSKISDPNQVESFINEVVVLSQINHRNVVKILGCCLETEVPLVVYEFIPNGTVYEHLHDETQSIKLTWKTRLRISKEIAGVLAYLHSAASTPIIHRDVKSSNILLDHNLTAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFGRPEVDRNLAAYFVSSMKQGRLLHILDKNIDEANIEQLKEVAHIAERCLRVKGEDRPTMKEVAMELEGILVVEERRWGSDNLSSEEAENLLKTARSIKNIEDVVGGSGINSYESYSLNQISMSLIGGR* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3009 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Mtr3g3009 773 ProSiteProfiles EGF-like domain profile. 312 349 IPR000742 -
Mtr3g3009 773 CDD STKc_IRAK 448 714 - -
Mtr3g3009 773 ProSiteProfiles Protein kinase domain profile. 442 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3009 773 Pfam Protein tyrosine and serine/threonine kinase 444 711 IPR001245 GO:0004672|GO:0006468
Mtr3g3009 773 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 26 745 - -
Mtr3g3009 773 SMART egfca_6 312 355 IPR001881 GO:0005509
Mtr3g3009 773 CDD EGF_CA 314 346 - -
Mtr3g3009 773 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 745 IPR045274 GO:0007166
Mtr3g3009 773 Gene3D Laminin 261 354 - -
Mtr3g3009 773 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 328 339 IPR000152 -
Mtr3g3009 773 SMART egf_5 262 311 IPR000742 -
Mtr3g3009 773 SMART egf_5 315 355 IPR000742 -
Mtr3g3009 773 Gene3D Transferase(Phosphotransferase) domain 1 518 733 - -
Mtr3g3009 773 SUPERFAMILY EGF/Laminin 312 349 - -
Mtr3g3009 773 Gene3D Phosphorylase Kinase; domain 1 419 517 - -
Mtr3g3009 773 SUPERFAMILY Protein kinase-like (PK-like) 427 711 IPR011009 -
Mtr3g3009 773 Pfam Wall-associated receptor kinase galacturonan-binding 44 100 IPR025287 GO:0030247
Mtr3g3009 773 Pfam EGF-like domain 316 346 IPR000742 -
Mtr3g3009 773 ProSitePatterns Calcium-binding EGF-like domain signature. 312 337 IPR018097 GO:0005509
Mtr3g3009 773 SMART serkin_6 442 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3009 Mtr-Chr3 44027513 44030845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3009 15 736 Receptor kinase-like Gene Family AT1G21230 44.809 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Mtr3g3009 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3009 - - mtr:MTR_3g088780 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3009 3 44027513 44030845 Mtr3g3009 3 44027513 44030845 ECH
Mtr1g0817 1 9239848 9243270 Mtr3g3009 3 44027513 44030845 PCT
Mtr3g3009 3 44027513 44030845 Mtr1g0818 1 9245820 9259854 PCT