Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3008 ATGGCTGTGCACTCAAAACAATTGCTGCTGATGGTGGCTGCTGTCATTTATATAAAAGCTGCAACTCAACCGATGTCACTTCCAAATTGCCCAACAAAATGTGGTTCCGTCACCATTCCCTTTCCATTTGGAACCACTAAGAATTGTTCCCTCGACAATACCTTTCTCATTAATTGCAACAAAACATCTTCAACTCCAACCTCAACACATGTTCCCTACTTGGATAAGAGTAATCAAAATGTCCTAAATATCTCACTCAATGGTGAATTGCACGTTGCATGGCCAGTAGCCAGCGATTGCTACGCAGAAAAGGGCAGATTCATATACCAAACGCTGCGGGATATGAACATGACACATTTTTACATCTCGCCAACTCGAAACAAGTTGACAGCAGTTGGCTGTGACACGATTGGAGCACTCTCGGCGATTGATTCTGGGGGAAACAACTACACCACAGGATGTGTGGCTTTATGCAACAGGCTTGATGATATTATGGCCAGTCAATCTTGCTCAGGTACTGGTTGTTGCGAGATTTCAATACCCCAAGGTCGTGTGTTGAGAGAAGTGGCCTATACTTCTGCAGGTATATTCAACAATCACTCAGACGTACATGATTTCAATCCCTGTGGTTATTCTTTTGTGGTTGAAAATGGAGCCTACAGCTTCGAATCCACAGACCTCCTTGAGTTAAAGAAGAAGGAGTTTCCTGTGTTGTTCGACTGGGCAGTAGGGAACCAAACATGCCAGCATGCTCAGAATGATCTTTCCAATTATGCATGTAAGGCCAGCAAAAGTACATGTTACAATTCAGCCGAGAGATCTGGCTACCTTTGTAGATGTGTGCATGGATATCGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCATGGAATCCAACAATTGTGTTGATGGGGCAACATGCATCAACTTTCCTGGAAGCTATCACTGTTTATGCCCGGAAGGATATGAAGGAGACGGGAAAAGTAATGGAACAAGATGCAGTTCAAAATCCAGTACCAAACAAAGGAAAGAGATTATATTGATCATTTCATTGAGTGTCAGCGTAAGCCTCATATTACTACTGGTGGGTAGCTTTTATGCGTATTGGGCATTGAAGAAAAGAAAGCTCATTCGACTTAAAGAACAATTTTTTCAACAAAACGGTGGCTTACTGTTACAACAACAGATAGTTAGGCATGGAGGGTCAACTGAAACAGCTAAAGTGTTCACTGTTGAGGAGCTAAATGAAGCAACCAATAACTTTGATGAAGGTAAGATCCTAGGCCAAGGTGGTCAGGGAACTGTTTACAAAGGAGTTTTACAAAATAAAAGAATTGTAGCAATAAAAAAGTCCAAAGTCAGTGACCCAAACCAGATTGAGCCGTTCATCAATGAAGTGGTCGTTCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCCAACGGCACTGTTTACGAGCATCTTCATGATCAAAACCAAACTATAAAACTTACATGGAAAACCAGATTAAGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATACTTACACTCTGCGGCTTCAACACCAATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAATCTCACTGCGAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAGATAACCACTCTAGTACAAGGGACATTAGGGTATCTTGACCCAGAATACTTCCTCACAAGCCAGTTAACAGAGAAGAGTGATGTTTATAGTTTTGGGGTGGTCCTAGCAGAGCTACTGACAGGAAAGAAGGCACTATCTTTGGGCAGGCCAGAGGTTGATAGAAACCTTGCCGCGTACTTTGTTTCTTCAATGAAAGAGGGTCGGTTACTTCATATTTTGGACAAAAGTATAGATAATGCTGATATTGAGCAACTAAAGGAGGTTGCTCTTATTGTAGAACGGTGTTTAAGGGTGAAGGGTGAGGACAGACCCACCATGAAAGAAGTGGCAATGGAATTAGAGGGAATATTAGTTAGTGAAGAGCGTCGTTGGGGAAGCGACAATTTATCTTCAGAAGAGACTGAAAAGTTGCTTAAAACAGCACGGTCCATTAAAAACGTTGAAGATGTTGTTGGTGGAAGTGGCATTAATTCTTCTGAATCATATAGCTTAAACCAGATTTCGATGTCATTGATTGGTGGAAGATGA 2274 0.4138 MAVHSKQLLLMVAAVIYIKAATQPMSLPNCPTKCGSVTIPFPFGTTKNCSLDNTFLINCNKTSSTPTSTHVPYLDKSNQNVLNISLNGELHVAWPVASDCYAEKGRFIYQTLRDMNMTHFYISPTRNKLTAVGCDTIGALSAIDSGGNNYTTGCVALCNRLDDIMASQSCSGTGCCEISIPQGRVLREVAYTSAGIFNNHSDVHDFNPCGYSFVVENGAYSFESTDLLELKKKEFPVLFDWAVGNQTCQHAQNDLSNYACKASKSTCYNSAERSGYLCRCVHGYRGNPYLIHGCQDINECMESNNCVDGATCINFPGSYHCLCPEGYEGDGKSNGTRCSSKSSTKQRKEIILIISLSVSVSLILLLVGSFYAYWALKKRKLIRLKEQFFQQNGGLLLQQQIVRHGGSTETAKVFTVEELNEATNNFDEGKILGQGGQGTVYKGVLQNKRIVAIKKSKVSDPNQIEPFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQTIKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQITTLVQGTLGYLDPEYFLTSQLTEKSDVYSFGVVLAELLTGKKALSLGRPEVDRNLAAYFVSSMKEGRLLHILDKSIDNADIEQLKEVALIVERCLRVKGEDRPTMKEVAMELEGILVSEERRWGSDNLSSEETEKLLKTARSIKNVEDVVGGSGINSSESYSLNQISMSLIGGR* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3008 757 Gene3D Transferase(Phosphotransferase) domain 1 502 721 - -
Mtr3g3008 757 ProSiteProfiles EGF-like domain profile. 296 339 IPR000742 -
Mtr3g3008 757 ProSitePatterns Calcium-binding EGF-like domain signature. 296 321 IPR018097 GO:0005509
Mtr3g3008 757 Pfam Protein kinase domain 427 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3008 757 CDD STKc_IRAK 432 698 - -
Mtr3g3008 757 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
Mtr3g3008 757 SUPERFAMILY Protein kinase-like (PK-like) 409 695 IPR011009 -
Mtr3g3008 757 SMART egfca_6 296 339 IPR001881 GO:0005509
Mtr3g3008 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 729 IPR045274 GO:0007166
Mtr3g3008 757 SMART egf_5 299 339 IPR000742 -
Mtr3g3008 757 SMART egf_5 247 295 IPR000742 -
Mtr3g3008 757 CDD EGF_CA 296 330 - -
Mtr3g3008 757 Gene3D Laminin 245 338 - -
Mtr3g3008 757 SUPERFAMILY EGF/Laminin 295 332 - -
Mtr3g3008 757 Gene3D Phosphorylase Kinase; domain 1 395 501 - -
Mtr3g3008 757 Pfam Calcium-binding EGF domain 296 338 IPR001881 GO:0005509
Mtr3g3008 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Mtr3g3008 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 12 729 - -
Mtr3g3008 757 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 312 323 IPR000152 -
Mtr3g3008 757 ProSiteProfiles Protein kinase domain profile. 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3008 757 SMART serkin_6 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3008 Mtr-Chr3 44022834 44026368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3008 1 720 Receptor kinase-like Gene Family AT1G21230 46.658 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Mtr3g3008 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3008 - - mtr:MTR_3g088780 1054.28