Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3003 ATGGAAACTGATGAAGAAGGAATGGAAAATTCTGATAACACTGAATGTGTTGAAGGTGTTCGGTGTTTGAAACGGAAAGCCATTGATGATGGGTTGCCAATTTCCAATGGAAATGGTGTTGTTGAAGAGAGTAGGCATTCGGAAAGTGAAGCTTTGAATGACTTGGCGATGTTTGCCAATGGAAGTAGTGTTGCTGATGTGGCCGAGGTTTTGAAAAGTTTGAAAAATGGGCTGAATGGAAATTGTGTTGCTGAAGAGGCTCGAGAATCGGTAAGTGAAGCTGTGAATGATGGGGCAGTGTTTTCCAATGGAAATAGTGTTGCTGATGTAGCTGAGGTTTTGAAAAGTTTGAGTAATGGGGTGAATGGAAATTGTGTTGCTGAAGAGGCTCGAGAATCGATAAGTGAAGCTGTGAATGATAGAACGGTGGTTGCAAATGGAAATTGTGTTGCTGAAGAGGCTCGAGAATCAACAAGTGAAGCTGTAAATGATGGGGGGGTGGTTGTGAATGGAAGTCGTGTTGCTAAAGAGGCTCGAGAATTGATAAGTGAAGCTGTGAATGATGGGGCGGTATTTTCGAATGGAAATGGTGTTAATGAAGAGGTTGGAGTCTTGAAAAGTGAAGATGTGAATGATGGGGTGGTGTTTTCGAATGGAAATGGGGTTGCTGAAGTGCCTGTGGTTTTAAAAAGTGATGTTTTGAATAATGGGGTGAATGGAAATGGTGTTACTGAAGAGGCTGGAGTCTTGAAAAGTGAAGCTGTTAGCAATGGGGTGGCAAGTTCAGGTGGGTTTGATTCTGGTGATGGGGGCTCTGGTGGAGTGACGTGTCTTCGAACTTATAAGAGGCGAAAGTATGATAAGTCGAGTTCAAAAGGCAAAGCGCAGGAGGATTGTGGAAAATGCGTGGAAAATGCGAGTCATATAGCAGACCAGGTTGTGAAGGAACCCTTAGATGCAACTTTAGGCAATACTGCAGATGATTGCGCCCATAGACATTGGGGAAACGTGGTACTAAAACAGTTATACCAGTCATTAGGCAATAGCAATGGTGGCATAAAGGGGTGCATAGGGGAAGCACTAATTCGACATCAAAGTTGTGCCACTACAGTTATGCAGGGAACTTCTAAAATTGGCAAAGATGGACAAGAATTCTCTTCACAATTTGATCGTTTATCTCATAGAACACGAGCTGAAGATAATGGGCATGCAAATGTCATGCAAAATGGATCTTCTAGTGAACCACATGGCCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGCAATTTATTAACCTCAGATAAATTCAATTCATTATGCAAGATTTTATTTGATAATTTCCAAGCAACGAAGCCGGAAAGTGTATTTGATTTTAGTGTCATAACCTTAAGGATGAAGCAGAAAGTCTATGAACAATCACCTGAACTTTTCTTGTCAGATATTCAACAGGTCTTTGGAAAGCTTCAAGATACATTTAAGGAAATTGTTGCTCTTTCTAATAGCCTTTCCAATATATCAACAGATTCCTACTCTAAGCTGGTTGGAATTTCTGCGCAGAGCACATCTGAAGATGAAAAACAAGCGGAATTGGACTCTCACATGAAACCGGAGCAAACGGAAGAATGCGCTGGTTGCAGTAGTTGTGGAGAAAGGGCAGATGGTACAGACTGTTTGGTCTGTGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCTTGCAGTTAATGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCACAAGTGGCTTTGGCTCTCCGCATGAAAATTGTGTAGTATGTGCGAGGTTGAATGATACAAAGATGCCGAAGAAAATAATTGGTGATGAAAGCCTCCCTACAAATGAGGAAACACTTGATGAATTTGATGATGATTCAAATGACTGCTATGATGGGATTCAAATTTGGACAGGTGGAAAAGAAACACTCAGTTGCAAAGTGTGTGGAAATAAAGCCATCAAAGGTGAAAAAATAAGAATATGTGGTCACCCTTTTTGTCCAAGTAAATACTACCATGCAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGCTATTGGTGGTACTGCCCTTCTTGTATATGCCAAGTTTGCCTCACCGATCAAGATGATTCACGGATTGTCCTCTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCACTGGATTCTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAAGCAAAAAAAGCGTATGAGAGTAACCAGCTGAGAACTGGTGAAACTGTTTCAAAGCCAAATGCTAATAACAACTGCAACAATAAATTTGTAGAAGAATTGGAAAGTTGTGGTGGAATGGACATGCTTTTAACTGCAGCCAATTCTCTGAATTTTGAAGAGAATTTGACCGAAAACCAGTTTGAGTAG 2463 0.4113 METDEEGMENSDNTECVEGVRCLKRKAIDDGLPISNGNGVVEESRHSESEALNDLAMFANGSSVADVAEVLKSLKNGLNGNCVAEEARESVSEAVNDGAVFSNGNSVADVAEVLKSLSNGVNGNCVAEEARESISEAVNDRTVVANGNCVAEEARESTSEAVNDGGVVVNGSRVAKEARELISEAVNDGAVFSNGNGVNEEVGVLKSEDVNDGVVFSNGNGVAEVPVVLKSDVLNNGVNGNGVTEEAGVLKSEAVSNGVASSGGFDSGDGGSGGVTCLRTYKRRKYDKSSSKGKAQEDCGKCVENASHIADQVVKEPLDATLGNTADDCAHRHWGNVVLKQLYQSLGNSNGGIKGCIGEALIRHQSCATTVMQGTSKIGKDGQEFSSQFDRLSHRTRAEDNGHANVMQNGSSSEPHGHGVTEMCQRVLCNLLTSDKFNSLCKILFDNFQATKPESVFDFSVITLRMKQKVYEQSPELFLSDIQQVFGKLQDTFKEIVALSNSLSNISTDSYSKLVGISAQSTSEDEKQAELDSHMKPEQTEECAGCSSCGERADGTDCLVCDSCEKVYHLSCIELAVNEIPHKSWYCANCTTSGFGSPHENCVVCARLNDTKMPKKIIGDESLPTNEETLDEFDDDSNDCYDGIQIWTGGKETLSCKVCGNKAIKGEKIRICGHPFCPSKYYHARCLTSKQLNSYGYWWYCPSCICQVCLTDQDDSRIVLCDGCDHAYHIYCMKPPLDSIPQGKWFCRKCDAGIKAISQAKKAYESNQLRTGETVSKPNANNNCNNKFVEELESCGGMDMLLTAANSLNFEENLTENQFE* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3003 820 SUPERFAMILY FYVE/PHD zinc finger 530 591 IPR011011 -
Mtr3g3003 820 SUPERFAMILY FYVE/PHD zinc finger 705 755 IPR011011 -
Mtr3g3003 820 Gene3D - 432 593 - -
Mtr3g3003 820 SMART PHD_3 655 705 IPR001965 -
Mtr3g3003 820 SMART PHD_3 706 751 IPR001965 -
Mtr3g3003 820 SMART PHD_3 545 591 IPR001965 -
Mtr3g3003 820 ProSiteProfiles Zinc finger PHD-type profile. 540 593 IPR019787 -
Mtr3g3003 820 ProSitePatterns Zinc finger PHD-type signature. 701 750 IPR019786 -
Mtr3g3003 820 Pfam PHD-finger 705 751 IPR019787 -
Mtr3g3003 820 Pfam PHD-finger 546 592 IPR019787 -
Mtr3g3003 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 758 IPR013083 -
Mtr3g3003 820 ProSiteProfiles Zinc finger PHD-type profile. 703 753 IPR019787 -
Mtr3g3003 820 PANTHER HISTONE ACETYLTRANSFERASE 336 812 - -
Mtr3g3003 820 PANTHER D4, ISOFORM A 336 812 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3003 705 772 C2H2 Transcription Factor Family AT3G01460 41.176 1.04e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g3003 PHD 1.1e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3003 - - gmx:100795906 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3003 3 43850561 43856414 Mtr3g3003 3 43850561 43856414 ECH