Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2995 ATGCTCTATACTCAAACATTGTTTAAAGAACACACAGAGAGAAAGAAAAAGGAGAAGAAGAAGCTAGAAAAGAAGATGGGAAGAGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGAATCCTTAAGAAAGCAAAGGAAATAAGTGTTCTTTGTGATGCTCAAGTTTCCCTTATTCTCTTTGGTGCTTCTGGAAAGATGCATGAATACATCAGCCCTTCTACCACGTTGATTGATATTCTGGACAGATACCAGAGAGCCTCTGGGAAAACCCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGATAGCATGCAAATTGATCTCAGGCACTTGAAGGGAGAGGATATTACCTCACTGAATTACAAAGAGCTGATGGCCCTTGAGGAATCCCTTGAAAATGGTCTTACTGGCGTCCGTGACAAAAAGATGGAAGTGCATAGGATGTTCAAGAGAAATGGAAAAATCTTGGAGGATGAAAATAAGGAACTCAATTTTCTTCTGCAACAGCATATGGCACTTGAAGGTGTGGGAAACATGCATGGACAATGGATTTAA 621 0.3913 MLYTQTLFKEHTERKKKEKKKLEKKMGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIDLRHLKGEDITSLNYKELMALEESLENGLTGVRDKKMEVHRMFKRNGKILEDENKELNFLLQQHMALEGVGNMHGQWI* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2995 206 PANTHER MADS-BOX TRANSCRIPTION FACTOR 26 200 - -
Mtr3g2995 206 Coils Coil 178 198 - -
Mtr3g2995 206 ProSitePatterns MADS-box domain signature. 28 82 IPR002100 GO:0003677|GO:0046983
Mtr3g2995 206 ProSiteProfiles K-box domain profile. 109 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g2995 206 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
Mtr3g2995 206 Coils Coil 102 136 - -
Mtr3g2995 206 Coils Coil 19 39 - -
Mtr3g2995 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 200 - -
Mtr3g2995 206 Gene3D - 38 125 IPR036879 GO:0003677|GO:0046983
Mtr3g2995 206 ProSiteProfiles MADS-box domain profile. 26 86 IPR002100 GO:0003677|GO:0046983
Mtr3g2995 206 SUPERFAMILY SRF-like 27 121 IPR036879 GO:0003677|GO:0046983
Mtr3g2995 206 CDD MADS_MEF2_like 27 105 IPR033896 GO:0000977|GO:0045944
Mtr3g2995 206 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Mtr3g2995 206 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Mtr3g2995 206 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Mtr3g2995 206 Pfam K-box region 106 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g2995 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 82 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2995 Mtr-Chr3 43776887 43779496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2995 26 168 MADS-box Gene Family AT5G20240 68.531 8.71e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr3g2995 K-box 2.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2995 K09264 - gmx:100795861 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2995 3 43776887 43779496 Mtr3g2995 3 43776887 43779496 ECH