Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2980 ATGTCTAATCATAATAATCGTCGTTCATCGTTTTCTTCTTCAACAACTTCGTCAATGGCGAAACGACACCCACCTGTTACCGCTTTAACATCAGAGAACAACGCCGGAAAAGTTTTAGCAGCCTCTGCCAAGAAACGTCCTCCTCTCACTAATCTCACCAATCAAAATTCTTCCCGCAACAACTCATCTACTTTGGTAACTAAAGTTGCAAAGACAAAGAAAGAACCTTCACCATGCAATTCTTCTTCAAGCTCAGTGATTTCTGTTAACAAAAAACCTACTTTGTCGAATGTTAAATCCGCTACTGTTGTTTTTCCTAAAGCCATTACTACTACTACTAGTACTACTTCTTCATTTTCTGGAAAGAATGAAGTTGTTCCTCCTCCTTCATCGGTTGCTCCTACTACCTTCAATGTTCCGGTTTCGAGTAGTATGGATTTATCGTCTCCTGGTAAATCCGATGGAATGTCGGTTTCTATGGACGAGACAATGTCGTCGTGTGATTCTTTCAAGAGTCCTGATATTGAATATGTCGATAACAGTGATGTTCCAGCTGTAGATTCTATTGAGAGGAAGACTTTTTGTAGTCTCAACATTTCTGATTCTAATTACCCATCAGGTAACATTTGCAGTAGAGACATTCTTGTTGAGTTGGAAAAGGGAGAGAAAATTGTTAATATTGATAATGATTACATGGATCCTCAGCTCTGTGCTACCTTTGCCTGTGATATCTACAAGCATCTACGTGCATCTGAGACAAAGAAAAGGCCTTCAACAGACTTCATGGAGAAAATTCAAAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGATTGGCTAGTGGAGGTGGCTGAAGAGTATAGACTTGTACCCGATACATTGTATTTGACAGTAAACTATATTGATCGATATCTTTCTGGGAATCCGATGAACAGGCAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATAACTGATAACACATACTTCAAGGATGAGGTTTTGCAGATGGAATCTACTGTCTTGAATTTTCTAAAATTCGAAATGACTGCCCCAACAATTAAATGCTTCTTGAGAAGATTTGTACGTGCAGCTCAAGGAATTGATGAGGTCCCTTCACTACAACTAGAGTGCTTGACAAATTTTATCGCCGAATTATCTCTGTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAATTTTCCTGGCCAAATATATGCTTTTCCCTGCCATGAAACCATGGAATCCGACATTGCAGCATTACACTCAATACCAGCCTTCTGATTTGTGTGCTTGTGTAAAGGATCTCCACCGTCTTTGTTGCAACAGCCCTAATTCTAATTTGCCTGCAATTAAGGAGAAATACAATCAGCACAAGTATAAATACGTTGCCAATAAGTACTGCCCTCCTTCAATACCTCAAGAATTTTTCCAGAACTGA 1518 0.3913 MSNHNNRRSSFSSSTTSSMAKRHPPVTALTSENNAGKVLAASAKKRPPLTNLTNQNSSRNNSSTLVTKVAKTKKEPSPCNSSSSSVISVNKKPTLSNVKSATVVFPKAITTTTSTTSSFSGKNEVVPPPSSVAPTTFNVPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPSGNICSRDILVELEKGEKIVNIDNDYMDPQLCATFACDIYKHLRASETKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKDEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGIDEVPSLQLECLTNFIAELSLLEYSMLCYAPSLIAASSIFLAKYMLFPAMKPWNPTLQHYTQYQPSDLCACVKDLHRLCCNSPNSNLPAIKEKYNQHKYKYVANKYCPPSIPQEFFQN* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2980 505 MobiDBLite consensus disorder prediction 143 163 - -
Mtr3g2980 505 MobiDBLite consensus disorder prediction 47 87 - -
Mtr3g2980 505 ProSitePatterns Cyclins signature. 274 305 IPR006671 -
Mtr3g2980 505 SUPERFAMILY Cyclin-like 372 497 IPR036915 -
Mtr3g2980 505 MobiDBLite consensus disorder prediction 1 37 - -
Mtr3g2980 505 SUPERFAMILY Cyclin-like 233 369 IPR036915 -
Mtr3g2980 505 PIRSF Cyclin_A_B_D_E 2 502 IPR039361 -
Mtr3g2980 505 Pfam Cyclin, C-terminal domain 372 491 IPR004367 -
Mtr3g2980 505 Gene3D - 257 370 - -
Mtr3g2980 505 CDD CYCLIN 370 463 IPR013763 -
Mtr3g2980 505 MobiDBLite consensus disorder prediction 1 87 - -
Mtr3g2980 505 Pfam Cyclin, N-terminal domain 243 369 IPR006671 -
Mtr3g2980 505 Gene3D - 243 490 - -
Mtr3g2980 505 CDD CYCLIN 273 362 IPR013763 -
Mtr3g2980 505 PANTHER CYCLIN-A1-1 34 504 - -
Mtr3g2980 505 PANTHER CYCLINS 34 504 IPR039361 -
Mtr3g2980 505 SMART Cyclin_C_2 372 495 IPR004367 -
Mtr3g2980 505 SMART cyclin_7 279 363 IPR013763 -
Mtr3g2980 505 SMART cyclin_7 376 464 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2980 Mtr-Chr3 43627890 43631610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2980 6 505 Core Cell Cycle Gene Families AT1G44110 59.486 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2980 K06627 - gmx:547781 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2980 3 43627890 43631610 Mtr3g2980 3 43627890 43631610 ECH