LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g2973	ATGGCAAACTTGATACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACATCAAGTTATGGAAACATCCTCAAATCATGAAGAGACACAAAAATCTGGATGGAGAAAGTTTTTGCCATATATAGGCCCTGGTTTTCTTGTTTCGTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAATCACGGATACGAGTTGCTGTGGCTGGTACTTATTGGACTCATATTCGCGCTTATAATTCAGTCACTGGCTGCAAATCTTGGTGTAACCACTGGCAAACACCTTTCAGAAGTATGTGAAGTTGAATATCCATTATTTGTGAAGTATTGCTTATGGTTATTAGCAGAGGTTGCTGTCATAGCAGCTGACATACCTGAAGTGATTGGGACAGCCTTTGCTCTCAACATACTATTCAACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTTCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTATTTGTAATGGCTGGATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTTCTGGTGTACTTAAGGGAATGTTTGTGCCCAAACTGGCTGGTGAAGGAGCCGTAGCCGATGCTATTGCTCTTTTGGGGGCCCTTATCATGCCGCACAATCTTTTCCTCCACTCTGCTCTTGTGCTATCTAGAAAAGTACCTAAATCTGTGAGAGGCATCAATGAAGCATGTAGATATTTCCTCTATGAGAGCGGATTCGCTTTGTTTGTGGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCACTGTCTGCTCTGCCAATGACCTATCTGGAGACAATGTTGAACGCTGCAATGATCTCACCCTTAACTCCGCTTCTTTCCTTCTAAAGAATGTGTTGGGACGATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACTTATGCAGGACAGTACATCATGCAGGGTTTCTTAGACATAAGGATGAAAAGATGGAAAAGGAATTTGATGACTAGATGCATTGCCATAGCACCCAGTCTTGCTGTTGCCATCATTGGTGGTTCTTCTGGCTCTAGTCGCCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGTACCAAAATGGGACCTCACAAGAATTCTATGATTATCATTACAATCTCATGGATACTAGGTTTTGGAATCATTAGTATCAATGTGTACTACCTCAGTACTGCCTTTGTGAAGTGGATAATACATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCAATTTATATTGCCTCAGTTATCTACCTTACCTTCAGAAAAGACACTGTTGAGATGTTCATCGAGACGAAAAATGATACAGTAATGCAAAACCAAGTGGAAAAAGGAATTGTGGATAATGGTCAACTAGAGTTGAGCCATGTTCCTTATAGAGAAGATTTAGCTGATATACCACTACCAGAATAA	1596	0.4179	MANLIQQQQQQQQQQQHQVMETSSNHEETQKSGWRKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCEVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFNIPLWAGVLLTGFSTLLLLSLQRFGVRKLELLITILVFVMAGCFFAEMSYVNPPASGVLKGMFVPKLAGEGAVADAIALLGALIMPHNLFLHSALVLSRKVPKSVRGINEACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLSGDNVERCNDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGIISINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAIYIASVIYLTFRKDTVEMFIETKNDTVMQNQVEKGIVDNGQLELSHVPYREDLADIPLPE*	532

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g2973	531	Hamap	Divalent metal cation transporter MntH [mntH].	11	445	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PANTHER	METAL TRANSPORTER NRAMP5	26	531	-	-
	Mtr3g2973	531	Pfam	Natural resistance-associated macrophage protein	58	419	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	116	142	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	144	163	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	169	190	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	219	242	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	329	348	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	357	374	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PRINTS	Natural resistance-associated macrophage protein signature	389	408	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	26	531	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2973	531	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	35	411	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g2973	Mtr-Chr3	43585153	43590136	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g2973	30	531	Inorganic Solute Cotransporters	AT1G15960	60.359	0.0	618

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g2973	K21398		-	gmx:100787785	850.506

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g2973	3	43585153	43590136	Mtr3g2973	3	43585153	43590136	ECH