LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g2972	ATGGCACATCAAGAAGTGAATAATGGTAGCAACAACCGTATAGTAGCCGTCAATGTGACCCCTTCTAGCACACCATCTTATAACCATGATGACTCCTCAAAGCAAGATCAGAAACCAGGATGGAAGAAGTTTTTGGCATATGTAGGTCCTGGTTTTCTTGTCTCCTTGGCCTACCTTGATCCCGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCACGGATATGAGCTGTTGTGGATCATACTTATTGGACTCATATTTGCCTGCATAATTCAATCATTGGCTGCAAATCTTGGAGTATGCACCGGTAAACACCTTTCAGAAATTTGTAAAGCTGAGTACCCATGGTTTGTGAAATACTGTTTATGGATATTAGCAGAACTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACGGCCTTTGCACTAAACATACTATTCCACGTCCCTGTATGGGGAGGGGTTCTGTTGACTGGGTGCAGCACTCTCTTGTTTTTGGGTCTACAAAGATTTGGGGTGAGGAAGTTGGAACTGCTGATTTCAATTCTAGTATTTGTAATGGCTGCATGTTTCTTTGGTGAATTGAGCTATGTAAAACCCCCTGCTAAAGGAGTAATTGAGGGAATGTTTGTTCCCAAACTCAACGGAAATGGAGCTGTAGGCGATGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTCCACTCTGCTCTAGTGCTATCTCGAAAAATACCTGGTACCAAGCGCGGCATCAATGATGCATGCAGATACTTTCTCATTGAGAGTGGTTTCGCGTTGTTTGTTGCATTTCTAATCAATGTTGCAATGATTTCTGTGACTGGCACTGTTTGCAAGGCTGATGATATTTCTGGAGAGAATGTTGATCGTTGCAATGATATTACCCTTAACTCCGCTTCTTTCCTTCTCCAGAATGTGTTGGGACGTTCAAGCTCAACTATTTATGCCATAGCATTGCTAGCTTCAGGACAAAGTTCTGCCATCACTGGAACCTATGCAGGCCAGTTTATCATGCAGGGTTTCTTGGACTTGAAGATGAAAAAATGGATAAGGAACTTGGTGACTAGGATTGTTGCCATAGCACCAAGTCTAGTTGTCTCTATCATTGGTGGTTCTTCTGGAGCTGGAAGACTCATTATCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGGACCAAGATGGGACCTCACAAGAATTCTATCATTATCATTATCATCTCATGGATACTGGGTTTGGGAATCATTGGAATCAATGTGTACTACCTCATTACTGCTTTTGTGGGTTGGATTATTCACAACAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGCTCATAGTGTTCCCTCTAATGGCACTGTATATCGTCTCAGTTATCTATCTAACATTCAGAAAAGACACTGTTGTAACGTTTGTGGAGGTTAAGGATGACCCGTCAATGCAAACCCATGTGGAAAAGGGGTTTGTAAACGATGGTCAGTTAGAGTTGAGTTATACTCCTTATAGAGAAGATTTAGCTGATATCACCCGACCAGAGGGACCTAGGTTGTGA	1629	0.4254	MAHQEVNNGSNNRIVAVNVTPSSTPSYNHDDSSKQDQKPGWKKFLAYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFACIIQSLAANLGVCTGKHLSEICKAEYPWFVKYCLWILAELAVIAADIPEVIGTAFALNILFHVPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGELSYVKPPAKGVIEGMFVPKLNGNGAVGDAIALLGALIMPHNLFLHSALVLSRKIPGTKRGINDACRYFLIESGFALFVAFLINVAMISVTGTVCKADDISGENVDRCNDITLNSASFLLQNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWIRNLVTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSRTKMGPHKNSIIIIIISWILGLGIIGINVYYLITAFVGWIIHNSLPKVANVFIGLIVFPLMALYIVSVIYLTFRKDTVVTFVEVKDDPSMQTHVEKGFVNDGQLELSYTPYREDLADITRPEGPRL*	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g2972	542	Pfam	Natural resistance-associated macrophage protein	65	426	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	42	420	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	34	537	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	123	149	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	151	170	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	176	197	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	226	249	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	336	355	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	364	381	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PRINTS	Natural resistance-associated macrophage protein signature	396	415	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr3g2972	542	PANTHER	METAL TRANSPORTER NRAMP5	34	537	-	-
	Mtr3g2972	542	Hamap	Divalent metal cation transporter MntH [mntH].	28	452	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g2972	Mtr-Chr3	43572856	43578964	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g2972	5	538	Inorganic Solute Cotransporters	AT1G15960	57.649	0.0	617

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g2972	K21398		-	gmx:100787785	861.292

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g2972	3	43572856	43578964	Mtr3g2972	3	43572856	43578964	ECH