Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2960 ATGGAGCTTGGTTTGGATAGTAGAAAATTACAATTACAACCACAAAACTTGAAGCAAGAACACTTTCATGTGTTGGCTGTAGATGATAGTGTCATTGATAGGATGCTTCTAGAGAGGCTCCTTAGAGATTCTTCATGCAAAGGAGATAAGGCTTTGAAATATCTTGGACTGAATATTGATGAAATTTCCTCAACAAAGTCTTCTATTTTAGAATCATCATCTCCTTCTCTTCCTCAACCATTGCAGTTGCAAGAGGGAAACAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTTAAAAGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGGTTATGTCATCAGAAAATGTACCTTCCAGAATTAGCATGTGCTTGGAAGAAGGGGCAGAAGAGTTTCTAATGAAGCCTCTTCAGTTATCAGATTTGCAGAAACTTCAGCCATATTTCCTAAAATCCCTTGAAAATTCCTCTGATGAGCAAGAATCTGCTAACAGTTCCACTACCACGACAGACTCCGACGACGACAACGATCTCATCGACAGCAACAATAACAGTAATGATGATAACAGTAATAGTATCAGCAAAAGGAAGGCCATGTCTCCTGAGCCTCCAGAGAGATCAATGCCCAAAATGAAAGGGTTGGCGGTGGTGGTGTAA 690 0.4 MELGLDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKGDKALKYLGLNIDEISSTKSSILESSSPSLPQPLQLQEGNKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRISMCLEEGAEEFLMKPLQLSDLQKLQPYFLKSLENSSDEQESANSSTTTTDSDDDNDLIDSNNNSNDDNSNSISKRKAMSPEPPERSMPKMKGLAVVV* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2960 229 MobiDBLite consensus disorder prediction 193 208 - -
Mtr3g2960 229 Pfam Response regulator receiver domain 78 155 IPR001789 GO:0000160
Mtr3g2960 229 ProSiteProfiles Response regulatory domain profile. 23 161 IPR001789 GO:0000160
Mtr3g2960 229 Gene3D - 7 166 - -
Mtr3g2960 229 MobiDBLite consensus disorder prediction 165 183 - -
Mtr3g2960 229 SMART REC_2 22 157 IPR001789 GO:0000160
Mtr3g2960 229 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 227 IPR045279 GO:0009736
Mtr3g2960 229 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 11 227 - -
Mtr3g2960 229 MobiDBLite consensus disorder prediction 165 229 - -
Mtr3g2960 229 SUPERFAMILY CheY-like 80 160 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2960 Mtr-Chr3 43475882 43479735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2960 22 163 Response Regulator Gene Family AT2G41310 54.362 1.91e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g2960 Response_reg 1.1e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2960 K14492 - gmx:100786187 270.396