Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2956 ATGTCGGGTGAAGATCATTCACAAAAGAAGGTGATGTTTGACGGAGAAGCGGCTTCGTCGTTGGTGAAGGAGCTGAGGGTGAGCTTTAGTTCTGGTAAGACACGAAGTTATGAATGGAGAATATCACAAGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTTTGCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGATTGGTATGTTTAAAAACTCATGTGAAGTCACACTGAAGGAATTGAAACAATGGATGGCCCCAGAGAAGGCTAAAACTTCAGTCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTCGGTGTTGTGTTAGTCATCTCTGCATGGAACTATCCATTTCTGCTGTCGCTTGATCCAGTCGTTGGAGCTATAGCAGCTGGAAACGCTGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCAAACTTATTAGGGAGGTACATGGATAACTCATCTGTAAGAGTTGTGGAGGGTGCAGTTGATGAAACTACCGCATTGTTGCAGCAGAAGTGGGACAAAATTTTCTATACAGGTAACGGAAAAGTGGGGCGGATAGTGATGGCTGCTGCTGCAAAACACCTCACACCAGTCGTTCTGGAGCTTGGAGGGAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTTACAGCTAGACGGATAATTTCGGGAAAGTGGTGTTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTTGATGCCTTAAAGAAAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTGTCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGATAAAGATGTTGGACGACGATAAGGTTTCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAGCAAATTGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATTATGAGCGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTGAACAAGCTGGAAGAAAGCTTCGATGTGATCAACGCAGGAACAAAGCCGCTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGAAAATTCTCCTTTGATGCTTTTACTCACAGAAAGGCAGTTCTTTATCGCGGTTTTACGGGTGATGCATCGATAAGGTACCCACCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGTGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA 1473 0.4318 MSGEDHSQKKVMFDGEAASSLVKELRVSFSSGKTRSYEWRISQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSVTTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSVRVVEGAVDETTALLQQKWDKIFYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKKELESFFGKNPIESNDLSRIVSSNHFARLIKMLDDDKVSGKIVYGGEKDESKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDVINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHRKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2956 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 445 IPR016162 GO:0016491
Mtr3g2956 490 CDD ALDH_F3FHI 18 449 - -
Mtr3g2956 490 SUPERFAMILY ALDH-like 21 455 IPR016161 GO:0016491
Mtr3g2956 490 PIRSF ALDH 4 485 IPR012394 GO:0006081
Mtr3g2956 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 227 427 IPR016163 GO:0016620
Mtr3g2956 490 PANTHER ALDEHYDE DEHYDROGENASE 3 490 - -
Mtr3g2956 490 Pfam Aldehyde dehydrogenase family 26 447 IPR015590 GO:0016491
Mtr3g2956 490 PANTHER ALDEHYDE DEHYDROGENASE 3 490 IPR012394 GO:0006081
Mtr3g2956 490 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 223 230 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2956 Mtr-Chr3 43418467 43422947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2956 13 490 Aldehyde Dehydrogenase Gene Family AT4G34240 65.063 0.0 647