Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2952 ATGTTCATCTCCTCAAATACCTCAAGGGTCGTGTTCTATTCTCATTCCCTCAATCGTATCGTAATACCTTTTTTTTCTTCTTCAATGGAACGTGAAGAGGGAAAACAATCTTCCGAAAAAAATCCATACACTGAACTTGAGGAAGTTAGCTCTGATTTTGTTCTAGCAATTGGCTTGCAAGAACAAGAGTTAGAGAGAACAACATTCACAAACCTAGCAACCATTGAAAGTGAAAGTGACGAAGATATAAGTGACTCCTCTTTTAGTAATGATGATATTGGTGATGCTGATTTTTCATTTAGTCAGGAGTTCGAAACCGATCTTCAGTTTGTTGAAGATGAAGGAAGCAATATTGATGATGATGATGATTATGAAGACGATGAAATGGAGTTGGAAGAAGATGAGGTTGATCCAGATGAATTATCCTATGAAGAGTTGATTGAATTAGGAAACTTCATAGGAGAAGAGAAGAGGGGATTACCAGCTAATGAAATCTCTTCTTGCTTACACCCTTATACTTCCAAAATTGCTGAAAGCACAAGTGGAATAGATCGTTGTGTGATTTGTCAGATTGAATATGAAGAAGGTGAATCCTTGGTTGCACTTCATTGTGACCATCCTTATCATACAGATTGTATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTATCAACAACCAACAAAGCTAAGAACACTTGA 720 0.3667 MFISSNTSRVVFYSHSLNRIVIPFFSSSMEREEGKQSSEKNPYTELEEVSSDFVLAIGLQEQELERTTFTNLATIESESDEDISDSSFSNDDIGDADFSFSQEFETDLQFVEDEGSNIDDDDDYEDDEMELEEDEVDPDELSYEELIELGNFIGEEKRGLPANEISSCLHPYTSKIAESTSGIDRCVICQIEYEEGESLVALHCDHPYHTDCISKWLQIKKVCPICSNEVSTTNKAKNT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2952 239 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 235 IPR033276 GO:0004842|GO:0016567|GO:0046621
Mtr3g2952 239 MobiDBLite consensus disorder prediction 112 139 - -
Mtr3g2952 239 SMART ring_2 186 226 IPR001841 -
Mtr3g2952 239 Pfam Ring finger domain 185 226 IPR001841 -
Mtr3g2952 239 SUPERFAMILY RING/U-box 185 232 - -
Mtr3g2952 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 239 IPR013083 -
Mtr3g2952 239 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Mtr3g2952 239 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 29 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2952 Mtr-Chr3 43389317 43390540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2952 133 230 C3H Transcription Factor Family AT3G63530 46.535 9.77e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2952 K19045 - gmx:100526881 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2952 3 43389317 43390540 Mtr5g2835 5 36929015 36942437 PCT