Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2950 ATGACATATATTGATAATGTACGAAACTCTTACCCCAATCCTCATTATGAAAGTCCCCGAATTCGTGTGCTCCCTTTGGTTTTGGATATTTCTGTTCGAATGTTATTTGAGAATCATAATGATTTTGTCACCAACATGGCTGTGTTGGTCAACACAATGGGAGAGACCCAATTTGTTCCTGCAACAAAGGAGGCTATTGAATCCCTTGAAAAGGTGAAGGTAGAAGATTGTGACACCATGAAAATGTGTGTTATCTGTCAAGTTGAGTTCAACCTTGGCATGGAGGTTACAAAAATGCCTTGTGATCATCTTTATCACCATGAATGCATTGTGCAATGGCTAGAAACTAGTCACATGTGCCCAATGTGTCGTCACCCCTTGCCTACTTCAACTGGTGGTTGA 402 0.408 MTYIDNVRNSYPNPHYESPRIRVLPLVLDISVRMLFENHNDFVTNMAVLVNTMGETQFVPATKEAIESLEKVKVEDCDTMKMCVICQVEFNLGMEVTKMPCDHLYHHECIVQWLETSHMCPMCRHPLPTSTGG* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2950 133 SUPERFAMILY RING/U-box 66 130 - -
Mtr3g2950 133 PANTHER F6A14.12 PROTEIN-RELATED 51 129 - -
Mtr3g2950 133 Pfam Ring finger domain 81 124 IPR001841 -
Mtr3g2950 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 129 - -
Mtr3g2950 133 SMART ring_2 83 123 IPR001841 -
Mtr3g2950 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 130 IPR013083 -
Mtr3g2950 133 ProSiteProfiles Zinc finger RING-type profile. 83 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2950 Mtr-Chr3 43378534 43378935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2950 60 129 C3H Transcription Factor Family AT5G01980 43.056 1.81e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2950 - - mtr:MTR_3g088080 192.586